Non-Coding RNA Search

Ss1.1-Pig2-80K08.5

Sequence:


               
               GACAGAACAGCAAAACTAAGAATTAATCATTGAAGAGGTATCCTGATAATGTAAATATTG
TAATAAGCTAAAAACTGCAGTCATCTAGAAGAATAAATAGGACACATCATGTCCATTTCT
GCCCATACCCGAAAGACCAACAAAAAGAATTCTCCATTGGAATCTATTCTAATGCCACAA
GTTCCACGCAGTAATTATTTGCATTTACAGGAAGAAAAGCAAAGACTACAACTAAAGAAA
TTCCTTCTTCATAGGATATTCCTCGTGGCCAAGATAACAGCAAACATGGAAAAAAAAGAT
ATTGCTGAATACTATGAACAAGTGTTTCAGTCGATTTTGAAACGTCACCTAGGAGAAGCA
GTGACAGGATTACTGCTCATATATCCTACTTCCATCCTGCATATCCTTGAGTCCTCCAAT
GATACTCTTTATCAAATTCTTTCAGACTATCTTAACCATGAAAAGGATGAAGTTGAATTT
TTTATCCAAGGAATGAAAATTATAGTCACATCCCACAATATCCCAACAAGGCTCTTTATG
CAATGGTATATTTCAGTAATAAAAGCACCAGTCATGTATCTTGATGATGTGACACAGTCA
CAGTCCTTACAAGAGGTCATCACAGAATTTCTCATCCAAACTCATAAACTAGCACTCCAC
ATTTTTAAGACTGTTAAAGTGGGCACTAAAGGACCAGGTGATAATTTGCACCAAATTGCA
CCTGACTTACTCCTTCCAGAACAAATAATAAAATACTTATGCAATTCTGAAGAATTTATG
GACCCAGAAACTTTCATAAACTTATATAATAAACCCATACATGTCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAGAACAGCAAAACTAAGAATTAATCATTGAAGAGGTATCCTGATAATGTAAATATTG
TAATAAGCTAAAAACTGCAGTCATCTAGAAGAATAAATAGGACACATCATGTCCATTTCT
GCCCATACCCGAAAGACCAACAAAAAGAATTCTCCATTGGAATCTATTCTAATGCCACAA
GTTCCACGCAGTAATTATTTGCATTTACAGGAAGAAAAGCAAAGACTACAACTAAAGAAA
TTCCTTCTTCATAGGATATTCCTCGTGGCCAAGATAACAGCAAACATGGAAAAAAAAGAT
ATTGCTGAATACTATGAACAAGTGTTTCAGTCGATTTTGAAACGTCACCTAGGAGAAGCA
GTGACAGGATTACTGCTCATATATCCTACTTCCATCCTGCATATCCTTGAGTCCTCCAAT
GATACTCTTTATCAAATTCTTTCAGACTATCTTAACCATGAAAAGGATGAAGTTGAATTT
TTTATCCAAGGAATGAAAATTATAGTCACATCCCACAATATCCCAACAAGGCTCTTTATG
CAATGGTATATTTCAGTAATAAAAGCACCAGTCATGTATCTTGATGATGTGACACAGTCA
CAGTCCTTACAAGAGGTCATCACAGAATTTCTCATCCAAACTCATAAACTAGCACTCCAC
ATTTTTAAGACTGTTAAAGTGGGCACTAAAGGACCAGGTGATAATTTGCACCAAATTGCA
CCTGACTTACTCCTTCCAGAACAAATAATAAAATACTTATGCAATTCTGAAGAATTTATG
GACCCAGAAACTTTCATAAACTTATATAATAAACCCATACATGTCACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61857882|ref|XP_592926.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61857882|ref|XP_592926.1|

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               20-828, gnl|bosTau2|chr4 (42060010-42059205)
               

               
               20-828, gnl|canFam2|chr14 (17726155-17726965)
               

               
               20-828, gnl|dasNov1|scaffold_5556 (39041-38230)
               

               
               20-828, gnl|echTel1|scaffold_311392 (12549-11742)
               

               
               20-828, gnl|hg17|chr7 (88068168-88068979)
               

               
               20-828, gnl|Hg17|chr7 (88068996-88068188)
               

               
               20-828, gnl|mm7|chr5 (7343206-7342431)
               

               
               20-828, gnl|Mm7|chr5 (7342410-7343184)
               

               
               20-828, gnl|monDom2|scaffold_7 (56656434-56657250)
               

               
               20-828, gnl|panTro1|chr6 (89587597-89588408)
               

               
               20-828, gnl|rheMac2|chr3 (128466292-128465481)
               

               
               20-828, gnl|rn3|chr4 (23266597-23267373)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-828, gnl|bosTau2|chr4 (42060010-42059205)
               

               
               20-828, gnl|canFam2|chr14 (17726155-17726965)
               

               
               20-828, gnl|dasNov1|scaffold_5556 (39041-38230)
               

               
               20-828, gnl|echTel1|scaffold_311392 (12549-11742)
               

               
               20-828, gnl|hg17|chr7 (88068168-88068979)
               

               
               20-828, gnl|Hg17|chr7 (88068996-88068188)
               

               
               20-828, gnl|mm7|chr5 (7343206-7342431)
               

               
               20-828, gnl|Mm7|chr5 (7342410-7343184)
               

               
               20-828, gnl|monDom2|scaffold_7 (56656434-56657250)
               

               
               20-828, gnl|panTro1|chr6 (89587597-89588408)
               

               
               20-828, gnl|rheMac2|chr3 (128466292-128465481)
               

               
               20-828, gnl|rn3|chr4 (23266597-23267373)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (1.4547)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (1.4547)

	20-828, gnl\|bosTau2\|chr4 (42060010-42059205)
	20-828, gnl\|canFam2\|chr14 (17726155-17726965)
	20-828, gnl\|dasNov1\|scaffold_5556 (39041-38230)
	20-828, gnl\|echTel1\|scaffold_311392 (12549-11742)
	20-828, gnl\|hg17\|chr7 (88068168-88068979)
	20-828, gnl\|Hg17\|chr7 (88068996-88068188)
	20-828, gnl\|mm7\|chr5 (7343206-7342431)
	20-828, gnl\|Mm7\|chr5 (7342410-7343184)
	20-828, gnl\|monDom2\|scaffold_7 (56656434-56657250)
	20-828, gnl\|panTro1\|chr6 (89587597-89588408)
	20-828, gnl\|rheMac2\|chr3 (128466292-128465481)
	20-828, gnl\|rn3\|chr4 (23266597-23267373)