Non-Coding RNA Search

Ss1.1-Pig2-80L18.5

Sequence:


               
               TGTGCGTGGGTATACACCCCCGTCAGCATTTAGTTACACAGCTGAGTCTCTGTGTCCAGA
CCAGCCCCGTCACGGTCAGCTAGAGGGGCCCCAGTGACTGAGTGTCCAAGCTGACCTTGA
GCAGGATCTGGGCAGGGGCGGGAGAAGGGACCTTTTTACCTCTCCACACCCCTTCTCCAT
GATGACCCACTCCAAGATATTATGTGTAAATTGTGTTATTATGTATATGGGTAAAGATGT
ACAAATATATGTCCTCTTTGTAGCAGATATGATTTTATATTTATAACGTGCATCAACATG
TGAAAGCAATCTAGGTCACTAGCACAGATGAAGTTGCCGGGCAGGTGGCTTCAGCACCTC
CACGTTGGTTTCTGGGTGCCCTCCTGTGAGTGGGTGCAGCTGAGCAGATGGGGCTGCCTC
GAGGCAGCCGTCCCAAGCATCAGTGTCTCTCCTCTCCTGTCTCCCCACCCCGCCCCGGCC
CTTGTGGAGCATCGGGCCCCCCTTCCGGTCTTGAGCAGTCAGAGCTCCCCACCCTCCACC
CCGAGCAGCCTCCCAGAGAGGGCTCCAGAGGCAGAGGCCCTTCTGCATGTTTTTAGCCCC
CACCTTTCCCCTGGAACCTGGGGAGGGCTTTTGTTTGTACATTTTAAAGTCAGCATTGTA
TTCCAGACAGAAGCTGTGATTGAGTGTCAGTGCCAAGGAAAGGGGTTTCCTGTGTGTCCT
TGGGGTTTGGGGCTCTTCTCAGAGCCATTGGGTGTCCCACACTGTCACCATCACACCCCA
CACAGCCCGTGAGATGTGTGACCTTTGTTGGACGTTCCGTGTTTGGTAATGAAGAGGTGG
GGGGACGGTGGCAAGGAGCCGTCATCCCCTTGGGAAGCCGGACGGTGTCCCCAGTGGGTG
ACGCCCTGAGTCTGCCAGTGCAGCCCGCCACGCTGGCAGGTTACATTTCTCAACGGGAGC
TGTTTCTCAGGCATCCTTTCTAGCCCTTCCCTGTTCCCCTTCCGTGTGCCTCAATAGTCT
CCCACAGAGTGAGGGGGCTGTGACCCTCCCTCGACTGGACTAATTAAAGAAAGACACTTG
TGTTCCCAAGTGGTGGTTTTATTTTTTTAGTTTTTATGTTTGTATGGGAAATTGTGGATA
AAGTGAAAGAATTGTAAATAAATAGTGTAATTCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGCGTGGGTATACACCCCCGTCAGCATTTAGTTACACAGCTGAGTCTCTGTGTCCAGA
CCAGCCCCGTCACGGTCAGCTAGAGGGGCCCCAGTGACTGAGTGTCCAAGCTGACCTTGA
GCAGGATCTGGGCAGGGGCGGGAGAAGGGACCTTTTTACCTCTCCACACCCCTTCTCCAT
GATGACCCACTCCAAGATATTATGTGTAAATTGTGTTATTATGTATATGGGTAAAGATGT
ACAAATATATGTCCTCTTTGTAGCAGATATGATTTTATATTTATAACGTGCATCAACATG
TGAAAGCAATCTAGGTCACTAGCACAGATGAAGTTGCCGGGCAGGTGGCTTCAGCACCTC
CACGTTGGTTTCTGGGTGCCCTCCTGTGAGTGGGTGCAGCTGAGCAGATGGGGCTGCCTC
GAGGCAGCCGTCCCAAGCATCAGTGTCTCTCCTCTCCTGTCTCCCCACCCCGCCCCGGCC
CTTGTGGAGCATCGGGCCCCCCTTCCGGTCTTGAGCAGTCAGAGCTCCCCACCCTCCACC
CCGAGCAGCCTCCCAGAGAGGGCTCCAGAGGCAGAGGCCCTTCTGCATGTTTTTAGCCCC
CACCTTTCCCCTGGAACCTGGGGAGGGCTTTTGTTTGTACATTTTAAAGTCAGCATTGTA
TTCCAGACAGAAGCTGTGATTGAGTGTCAGTGCCAAGGAAAGGGGTTTCCTGTGTGTCCT
TGGGGTTTGGGGCTCTTCTCAGAGCCATTGGGTGTCCCACACTGTCACCATCACACCCCA
CACAGCCCGTGAGATGTGTGACCTTTGTTGGACGTTCCGTGTTTGGTAATGAAGAGGTGG
GGGGACGGTGGCAAGGAGCCGTCATCCCCTTGGGAAGCCGGACGGTGTCCCCAGTGGGTG
ACGCCCTGAGTCTGCCAGTGCAGCCCGCCACGCTGGCAGGTTACATTTCTCAACGGGAGC
TGTTTCTCAGGCATCCTTTCTAGCCCTTCCCTGTTCCCCTTCCGTGTGCCTCAATAGTCT
CCCACAGAGTGAGGGGGCTGTGACCCTCCCTCGACTGGACTAATTAAAGAAAGACACTTG
TGTTCCCAAGTGGTGGTTTTATTTTTTTAGTTTTTATGTTTGTATGGGAAATTGTGGATA
AAGTGAAAGAATTGTAAATAAATAGTGTAATTCCTC

Predicted RNA structure(s): 5 entry(ies)

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Predicted RNA structure(s): 5 entry(ies)

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               1-222, - strand, RNAz p=0.905066
               

               
               483-661, - strand, RNAz p=0.989438
               

               
               554-660, - strand, RNAz p=0.694055
               

               
               741-851, - strand, RNAz p=0.954649
               

               
               1003-1119, - strand, RNAz p=0.537844

Predicted RNA structure(s): 5 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-222, - strand, RNAz p=0.905066
               

               
               483-661, - strand, RNAz p=0.989438
               

               
               554-660, - strand, RNAz p=0.694055
               

               
               741-851, - strand, RNAz p=0.954649
               

               
               1003-1119, - strand, RNAz p=0.537844

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               567-724, - strand, RNAmicro p=0.999781

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               567-724, - strand, RNAmicro p=0.999781

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-1176, gnl|bosTau2|chr23 (10255042-10256273)
               

               
               1-1176, gnl|Hg17|chr6 (37407553-37408719)
               


               
               483-1173, gnl|bosTau2|chr1 (31248067-31248749)
               

               
               483-1173, gnl|Hg17|chr6 (37407993-37408716)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1176, gnl|bosTau2|chr23 (10255042-10256273)
               

               
               1-1176, gnl|Hg17|chr6 (37407553-37408719)
               


               
               483-1173, gnl|bosTau2|chr1 (31248067-31248749)
               

               
               483-1173, gnl|Hg17|chr6 (37407993-37408716)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

	1-222, - strand, RNAz p=0.905066
	483-661, - strand, RNAz p=0.989438
	554-660, - strand, RNAz p=0.694055
	741-851, - strand, RNAz p=0.954649
	1003-1119, - strand, RNAz p=0.537844

	1-1176, gnl\|bosTau2\|chr23 (10255042-10256273)
	1-1176, gnl\|Hg17\|chr6 (37407553-37408719)

	483-1173, gnl\|bosTau2\|chr1 (31248067-31248749)
	483-1173, gnl\|Hg17\|chr6 (37407993-37408716)