Ss1.1-Pig2-80M23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGACGGCCAACCTGGAGCTGCTGCTGCAGCGCTGCAGCGAGGTCACGCACTGGGTGGC CACCGAGGTGCTGCTCTGCGAGGCCCCGGGCAAGCGCGCGCAGCTGCTCAAGAAGTTCAT CAAGATCGCGGCCATCTGCAAGCAGAACCAGGACCTGCTGTCCTTCTACGCCGTGGTCAT GGGGCTGGACAACGCCGCGGTCAGCCGCCTGAGGCTCACCTGGGAGAAGCTGCCGGGGAA ATTCAAGAATTTGTTCCGCAAATTTGAGAACCTGACAGACCCCTGCAGGAACCACAAAAG CTACCGAGAAGTGATCTCCAAGATGAAACCCCCTGTGATTCCTTTTGTGCCTCTGATCCT CAAAGACCTGACTTTCCTGCACGAGGGGAGTAAGACCCTTGTAGATGGCTTGGTGAACAT TGAGAAGCTGCATTCAGTGGCTGAAAAGGTGAGGACAGTCCGCAAATACCGCAGCCGGCC CCTGTGCCTCGATATGGAAGCCTCCCCGCATCACCTGCAGACCAAGGCGTATGTGCGCCA GTTCCAGGTCATCGACAACCAGAACCTCCTCTTCGAGCTTTCCTACAAGCTGGAGGCCAA CAGTCAGTGAGAACAGAGGTTCTGGCCGGGCCCTTACCAGGGTCCTCGGGCACCTGGCAC TCAAGCACTTTGCACGACGTCCCAACCTGCATCGTGACCTCTTTCCCTGGAGCCACTTCC CGCCCCACGGGGAAGAGCTGGGAGGACTCACCCCTGGACTCATAAGCCTGTTCATGCTGA CGTCCTCTCCCCCTGGCGCCCTCAAGGCCAAACCACCCTCTCCGGGGGGGTTCCCGCGGT CCGGGGAAGGGGGGCAGAGCGCGCCTTCCGCTGGCCCCTCCCACCGAGGTCTGTTCCGGA GACAGGAGTCCCCAGCCTCCCCTTCCCAAGCCGGCAGGAAAGCTGCCCCCGCTCCTGCCT CTCAGAGCCCAATTGTGGGAGAGGTTGGCAGCCTTCCTCTCCACCACCTGCCCAGCCCAG CTTCTCCCTGGTCGCGGCTGCGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGACGGCCAACCTGGAGCTGCTGCTGCAGCGCTGCAGCGAGGTCACGCACTGGGTGGC CACCGAGGTGCTGCTCTGCGAGGCCCCGGGCAAGCGCGCGCAGCTGCTCAAGAAGTTCAT CAAGATCGCGGCCATCTGCAAGCAGAACCAGGACCTGCTGTCCTTCTACGCCGTGGTCAT GGGGCTGGACAACGCCGCGGTCAGCCGCCTGAGGCTCACCTGGGAGAAGCTGCCGGGGAA ATTCAAGAATTTGTTCCGCAAATTTGAGAACCTGACAGACCCCTGCAGGAACCACAAAAG CTACCGAGAAGTGATCTCCAAGATGAAACCCCCTGTGATTCCTTTTGTGCCTCTGATCCT CAAAGACCTGACTTTCCTGCACGAGGGGAGTAAGACCCTTGTAGATGGCTTGGTGAACAT TGAGAAGCTGCATTCAGTGGCTGAAAAGGTGAGGACAGTCCGCAAATACCGCAGCCGGCC CCTGTGCCTCGATATGGAAGCCTCCCCGCATCACCTGCAGACCAAGGCGTATGTGCGCCA GTTCCAGGTCATCGACAACCAGAACCTCCTCTTCGAGCTTTCCTACAAGCTGGAGGCCAA CAGTCAGTGAGAACAGAGGTTCTGGCCGGGCCCTTACCAGGGTCCTCGGGCACCTGGCAC TCAAGCACTTTGCACGACGTCCCAACCTGCATCGTGACCTCTTTCCCTGGAGCCACTTCC CGCCCCACGGGGAAGAGCTGGGAGGACTCACCCCTGGACTCATAAGCCTGTTCATGCTGA CGTCCTCTCCCCCTGGCGCCCTCAAGGCCAAACCACCCTCTCCGGGGGGGTTCCCGCGGT CCGGGGAAGGGGGGCAGAGCGCGCCTTCCGCTGGCCCCTCCCACCGAGGTCTGTTCCGGA GACAGGAGTCCCCAGCCTCCCCTTCCCAAGCCGGCAGGAAAGCTGCCCCCGCTCCTGCCT CTCAGAGCCCAATTGTGGGAGAGGTTGGCAGCCTTCCTCTCCACCACCTGCCCAGCCCAG CTTCTCCCTGGTCGCGGCTGCGAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 677-791, - strand, RNAz p=0.681382 | |
| 910-1016, - strand, RNAz p=0.554192 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 677-791, - strand, RNAz p=0.681382 | |
| 910-1016, - strand, RNAz p=0.554192 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-138, gnl|bosTau2|chr19 (34433141-34433004) | |
| 1-138, gnl|canFam2|chr9 (25718342-25718151) | |
| 1-138, gnl|danRer3|chr9 (7720525-7720337) | |
| 1-138, gnl|dasNov1|scaffold_5157 (86968-87159) | |
| 1-138, gnl|echTel1|scaffold_314918 (53324-53511) | |
| 1-138, gnl|fr1|chrUn (74692871-74692684) | |
| 1-138, gnl|galGal2|chrUn (6525961-6526152) | |
| 1-138, gnl|hg17|chr17 (35601088-35601279) | |
| 1-138, gnl|Hg17|chr17 (35601138-35601275) | |
| 1-138, gnl|loxAfr1|scaffold_4088 (68177-67973) | |
| 1-138, gnl|mm7|chr11 (98958151-98958342) | |
| 1-138, gnl|Mm7|chr11 (98958201-98958338) | |
| 1-138, gnl|monDom2|scaffold_18 (49386862-49387048) | |
| 1-138, gnl|oryCun1|scaffold_140423 (1352-1161) | |
| 1-138, gnl|panTro1|chr19 (38840771-38840962) | |
| 1-138, gnl|rheMac2|chr16 (50303083-50303274) | |
| 1-138, gnl|rn3|chr10 (87632636-87632827) | |
| 1-138, gnl|tetNig1|chrUn_random (46047353-46047544) | |
| 1-138, gnl|xenTro1|scaffold_670 (293341-293152) | |
| 329-430, gnl|bosTau2|chr19 (34430993-34430892) | |
| 329-430, gnl|canFam2|chr9 (25716737-25716647) | |
| 329-430, gnl|danRer3|chr9 (7715698-7715626) | |
| 329-430, gnl|dasNov1|scaffold_303998 (350-441) | |
| 329-430, gnl|echTel1|scaffold_241131 (662-753) | |
| 329-430, gnl|fr1|chrUn (74692067-74691972) | |
| 329-430, gnl|galGal2|chrUn (6527277-6527373) | |
| 329-430, gnl|hg17|chr17 (35602684-35602779) | |
| 329-430, gnl|Hg17|chr17 (35602683-35602768) | |
| 329-430, gnl|loxAfr1|scaffold_4088 (66496-66405) | |
| 329-430, gnl|mm7|chr11 (98959384-98959475) | |
| 329-430, gnl|Mm7|chr11 (98959384-98959468) | |
| 329-430, gnl|monDom2|scaffold_18 (49390074-49390172) | |
| 329-430, gnl|oryCun1|scaffold_201552 (224195-224270) | |
| 329-430, gnl|panTro1|chr19 (38842367-38842462) | |
| 329-430, gnl|rheMac2|chr16 (50304679-50304774) | |
| 329-430, gnl|rn3|chr10 (87633902-87633993) | |
| 329-430, gnl|tetNig1|chrUn_random (46048448-46048518) | |
| 329-430, gnl|xenTro1|scaffold_670 (290246-290157) | |
| 479-1044, gnl|bosTau2|chr19 (34430271-34429690) | |
| 479-1044, gnl|Hg17|chr17 (35603436-35603989) | |
| 479-1044, gnl|Mm7|chr11 (98960110-98960633) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-138, gnl|bosTau2|chr19 (34433141-34433004) | |
| 1-138, gnl|canFam2|chr9 (25718342-25718151) | |
| 1-138, gnl|danRer3|chr9 (7720525-7720337) | |
| 1-138, gnl|dasNov1|scaffold_5157 (86968-87159) | |
| 1-138, gnl|echTel1|scaffold_314918 (53324-53511) | |
| 1-138, gnl|fr1|chrUn (74692871-74692684) | |
| 1-138, gnl|galGal2|chrUn (6525961-6526152) | |
| 1-138, gnl|hg17|chr17 (35601088-35601279) | |
| 1-138, gnl|Hg17|chr17 (35601138-35601275) | |
| 1-138, gnl|loxAfr1|scaffold_4088 (68177-67973) | |
| 1-138, gnl|mm7|chr11 (98958151-98958342) | |
| 1-138, gnl|Mm7|chr11 (98958201-98958338) | |
| 1-138, gnl|monDom2|scaffold_18 (49386862-49387048) | |
| 1-138, gnl|oryCun1|scaffold_140423 (1352-1161) | |
| 1-138, gnl|panTro1|chr19 (38840771-38840962) | |
| 1-138, gnl|rheMac2|chr16 (50303083-50303274) | |
| 1-138, gnl|rn3|chr10 (87632636-87632827) | |
| 1-138, gnl|tetNig1|chrUn_random (46047353-46047544) | |
| 1-138, gnl|xenTro1|scaffold_670 (293341-293152) | |
| 329-430, gnl|bosTau2|chr19 (34430993-34430892) | |
| 329-430, gnl|canFam2|chr9 (25716737-25716647) | |
| 329-430, gnl|danRer3|chr9 (7715698-7715626) | |
| 329-430, gnl|dasNov1|scaffold_303998 (350-441) | |
| 329-430, gnl|echTel1|scaffold_241131 (662-753) | |
| 329-430, gnl|fr1|chrUn (74692067-74691972) | |
| 329-430, gnl|galGal2|chrUn (6527277-6527373) | |
| 329-430, gnl|hg17|chr17 (35602684-35602779) | |
| 329-430, gnl|Hg17|chr17 (35602683-35602768) | |
| 329-430, gnl|loxAfr1|scaffold_4088 (66496-66405) | |
| 329-430, gnl|mm7|chr11 (98959384-98959475) | |
| 329-430, gnl|Mm7|chr11 (98959384-98959468) | |
| 329-430, gnl|monDom2|scaffold_18 (49390074-49390172) | |
| 329-430, gnl|oryCun1|scaffold_201552 (224195-224270) | |
| 329-430, gnl|panTro1|chr19 (38842367-38842462) | |
| 329-430, gnl|rheMac2|chr16 (50304679-50304774) | |
| 329-430, gnl|rn3|chr10 (87633902-87633993) | |
| 329-430, gnl|tetNig1|chrUn_random (46048448-46048518) | |
| 329-430, gnl|xenTro1|scaffold_670 (290246-290157) | |
| 479-1044, gnl|bosTau2|chr19 (34430271-34429690) | |
| 479-1044, gnl|Hg17|chr17 (35603436-35603989) | |
| 479-1044, gnl|Mm7|chr11 (98960110-98960633) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) |