Ss1.1-Pig2-80N16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAAAAAAGAGCAAGTGAACATTTAAGGTGGTGGAAAGCAGTCTGGAAACAGCTGACGAG TGGGCATACGTCCCCATATCGGTACCACCACCACCATCTCAATGAGAAAAATAACATCTT TTTCAGCTTCAGCTTACTCTTAATATTTTTCAGTCTACTCTGTGACCCAACACTGCATCC AAGCTCAAGGGATGGGCTTGATGCAATCACTCCTTTCAGAAAGCCCCACCTAGATCAAGC CCCAATGTAAAAGAGCACGTTGTTTTAAGGGGAGCATCCTTCCCAGTGGCTAGAAAACCA CTGTTGAGAGAAGTCCCAGTTAGGGTTGACCAAGGATGTGCCACTAAGGTAAAGAGGAGC AGATCAAGGCAGATGGACATTGGCTGCATGCATGGATGGTTTGCTCTGCCTCTTCCAGGA GGACCAGACACACTGAAGGAGCTTTAGGCTCTTGCAGCCAAAGACAGGATGCACCTGGAG GTCCAGAGAGGGAGGCTGTAGGAGACAACTCTAGGTTGGAAGTCTCCAACCTCAGCCTCC CTCGAAGAAGGGCGAGGCTGAGCTGACCCATTGCCCACTTGGCCATAGGGGTCCCATCTT TGTTTCCAGTTGAGACAAAGGCCAGGAGAGGGGCTGCAATGAGCTCTTGAAGCTCCAGTT TCTCCAGTGAGAAAGTCCTGCACGAAAGCTTCTAAGACCAGGCCCTTAGCCAAACTACTC TGTGAGTAAGGGAGGTTGAAGACCAGAAGGTGCCGAAGACCAACCACATTTCCAAGGGCA TTCCTGAAAAAAGGGGATTTTTTTTTTTTTTTTTTTTTTTTGTATTTCTTTGCTGGAAGC AAAGATGGACCTGAAGCGATTGGTACTATTGCCAAAATGTCAGCGAAATGGAGAGAAACA GGCCCTGTATTCCCAACAGTGATATCGATCAGAAATAAAAGTTCCCTTCAAAAACGCCTC TGAAGTCTGACATTTCTCCTTGGCCCTAGGCCTCTGTCGTTGGTGTCATTGTTGATGTCA CCTCCTAAAAGGACCTTTACTTTCTGGCTGCCACAGATGTGTTGAATGCCATAGATGTGT CACTCCCCACGTACAGTCTGGCCGAGTCAATGGAGAGGGAGATGCTGGATTTGTGTATCA CTGGCTGTCAGTTCCTAATGGTGTTAAACCTCACACAGGTGTGCTAGCCTTGAACTATAG CGTGTCACATACCTGAGTTTGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAAAAAAGAGCAAGTGAACATTTAAGGTGGTGGAAAGCAGTCTGGAAACAGCTGACGAG TGGGCATACGTCCCCATATCGGTACCACCACCACCATCTCAATGAGAAAAATAACATCTT TTTCAGCTTCAGCTTACTCTTAATATTTTTCAGTCTACTCTGTGACCCAACACTGCATCC AAGCTCAAGGGATGGGCTTGATGCAATCACTCCTTTCAGAAAGCCCCACCTAGATCAAGC CCCAATGTAAAAGAGCACGTTGTTTTAAGGGGAGCATCCTTCCCAGTGGCTAGAAAACCA CTGTTGAGAGAAGTCCCAGTTAGGGTTGACCAAGGATGTGCCACTAAGGTAAAGAGGAGC AGATCAAGGCAGATGGACATTGGCTGCATGCATGGATGGTTTGCTCTGCCTCTTCCAGGA GGACCAGACACACTGAAGGAGCTTTAGGCTCTTGCAGCCAAAGACAGGATGCACCTGGAG GTCCAGAGAGGGAGGCTGTAGGAGACAACTCTAGGTTGGAAGTCTCCAACCTCAGCCTCC CTCGAAGAAGGGCGAGGCTGAGCTGACCCATTGCCCACTTGGCCATAGGGGTCCCATCTT TGTTTCCAGTTGAGACAAAGGCCAGGAGAGGGGCTGCAATGAGCTCTTGAAGCTCCAGTT TCTCCAGTGAGAAAGTCCTGCACGAAAGCTTCTAAGACCAGGCCCTTAGCCAAACTACTC TGTGAGTAAGGGAGGTTGAAGACCAGAAGGTGCCGAAGACCAACCACATTTCCAAGGGCA TTCCTGAAAAAAGGGGATTTTTTTTTTTTTTTTTTTTTTTTGTATTTCTTTGCTGGAAGC AAAGATGGACCTGAAGCGATTGGTACTATTGCCAAAATGTCAGCGAAATGGAGAGAAACA GGCCCTGTATTCCCAACAGTGATATCGATCAGAAATAAAAGTTCCCTTCAAAAACGCCTC TGAAGTCTGACATTTCTCCTTGGCCCTAGGCCTCTGTCGTTGGTGTCATTGTTGATGTCA CCTCCTAAAAGGACCTTTACTTTCTGGCTGCCACAGATGTGTTGAATGCCATAGATGTGT CACTCCCCACGTACAGTCTGGCCGAGTCAATGGAGAGGGAGATGCTGGATTTGTGTATCA CTGGCTGTCAGTTCCTAATGGTGTTAAACCTCACACAGGTGTGCTAGCCTTGAACTATAG CGTGTCACATACCTGAGTTTGAAA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 516-706, - strand, RNAz p=0.912182 | |
| 783-1046, - strand, RNAz p=0.857073 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 516-706, - strand, RNAz p=0.912182 | |
| 783-1046, - strand, RNAz p=0.857073 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 25-1046, gnl|bosTau2|chr15 (27683377-27684400) | |
| 25-1046, gnl|canFam2|chr21 (36925453-36926283) | |
| 25-1046, gnl|dasNov1|scaffold_79422 (4249-3419) | |
| 25-1046, gnl|echTel1|scaffold_312429 (28671-27963) | |
| 25-1046, gnl|hg17|chr11 (10551398-10552232) | |
| 25-1046, gnl|Hg17|chr11 (10552445-10551402) | |
| 25-1046, gnl|loxAfr1|scaffold_208754 (431-1209) | |
| 25-1046, gnl|mm7|chr7 (106783783-106784571) | |
| 25-1046, gnl|Mm7|chr7 (106784805-106783771) | |
| 25-1046, gnl|oryCun1|scaffold_210897 (127536-126691) | |
| 25-1046, gnl|panTro1|chr9 (10785727-10786563) | |
| 25-1046, gnl|rheMac2|chr14 (61375519-61374705) | |
| 25-1046, gnl|rn3|chr1 (168738211-168739034) | |
| 1076-1224, gnl|bosTau2|chr15 (27684399-27684546) | |
| 1076-1224, gnl|canFam2|chr21 (36925677-36925270) | |
| 1076-1224, gnl|canFam2|chr21 (36925255-36925452) | |
| 1076-1224, gnl|dasNov1|scaffold_79422 (4049-4426) | |
| 1076-1224, gnl|dasNov1|scaffold_79422 (4438-4250) | |
| 1076-1224, gnl|echTel1|scaffold_312429 (28479-28845) | |
| 1076-1224, gnl|echTel1|scaffold_312429 (28857-28672) | |
| 1076-1224, gnl|hg17|chr11 (10551210-10551397) | |
| 1076-1224, gnl|Hg17|chr11 (10551403-10551237) | |
| 1076-1224, gnl|hg17|chr7 (54027763-54028159) | |
| 1076-1224, gnl|loxAfr1|scaffold_208754 (645-253) | |
| 1076-1224, gnl|loxAfr1|scaffold_208754 (241-430) | |
| 1076-1224, gnl|mm7|chr7 (106783987-106783608) | |
| 1076-1224, gnl|mm7|chr7 (106783593-106783782) | |
| 1076-1224, gnl|Mm7|chr7 (106783772-106783620) | |
| 1076-1224, gnl|monDom2|scaffold_10 (60798553-60798737) | |
| 1076-1224, gnl|oryCun1|scaffold_210897 (127312-127704) | |
| 1076-1224, gnl|oryCun1|scaffold_210897 (127716-127537) | |
| 1076-1224, gnl|panTro1|chr6 (55722744-55723140) | |
| 1076-1224, gnl|panTro1|chr9 (10785539-10785726) | |
| 1076-1224, gnl|rheMac2|chr14 (61375707-61375520) | |
| 1076-1224, gnl|rheMac2|chr3 (72116220-72115827) | |
| 1076-1224, gnl|rn3|chr1 (168738431-168738036) | |
| 1076-1224, gnl|rn3|chr1 (168738021-168738210) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 25-1046, gnl|bosTau2|chr15 (27683377-27684400) | |
| 25-1046, gnl|canFam2|chr21 (36925453-36926283) | |
| 25-1046, gnl|dasNov1|scaffold_79422 (4249-3419) | |
| 25-1046, gnl|echTel1|scaffold_312429 (28671-27963) | |
| 25-1046, gnl|hg17|chr11 (10551398-10552232) | |
| 25-1046, gnl|Hg17|chr11 (10552445-10551402) | |
| 25-1046, gnl|loxAfr1|scaffold_208754 (431-1209) | |
| 25-1046, gnl|mm7|chr7 (106783783-106784571) | |
| 25-1046, gnl|Mm7|chr7 (106784805-106783771) | |
| 25-1046, gnl|oryCun1|scaffold_210897 (127536-126691) | |
| 25-1046, gnl|panTro1|chr9 (10785727-10786563) | |
| 25-1046, gnl|rheMac2|chr14 (61375519-61374705) | |
| 25-1046, gnl|rn3|chr1 (168738211-168739034) | |
| 1076-1224, gnl|bosTau2|chr15 (27684399-27684546) | |
| 1076-1224, gnl|canFam2|chr21 (36925677-36925270) | |
| 1076-1224, gnl|canFam2|chr21 (36925255-36925452) | |
| 1076-1224, gnl|dasNov1|scaffold_79422 (4049-4426) | |
| 1076-1224, gnl|dasNov1|scaffold_79422 (4438-4250) | |
| 1076-1224, gnl|echTel1|scaffold_312429 (28479-28845) | |
| 1076-1224, gnl|echTel1|scaffold_312429 (28857-28672) | |
| 1076-1224, gnl|hg17|chr11 (10551210-10551397) | |
| 1076-1224, gnl|Hg17|chr11 (10551403-10551237) | |
| 1076-1224, gnl|hg17|chr7 (54027763-54028159) | |
| 1076-1224, gnl|loxAfr1|scaffold_208754 (645-253) | |
| 1076-1224, gnl|loxAfr1|scaffold_208754 (241-430) | |
| 1076-1224, gnl|mm7|chr7 (106783987-106783608) | |
| 1076-1224, gnl|mm7|chr7 (106783593-106783782) | |
| 1076-1224, gnl|Mm7|chr7 (106783772-106783620) | |
| 1076-1224, gnl|monDom2|scaffold_10 (60798553-60798737) | |
| 1076-1224, gnl|oryCun1|scaffold_210897 (127312-127704) | |
| 1076-1224, gnl|oryCun1|scaffold_210897 (127716-127537) | |
| 1076-1224, gnl|panTro1|chr6 (55722744-55723140) | |
| 1076-1224, gnl|panTro1|chr9 (10785539-10785726) | |
| 1076-1224, gnl|rheMac2|chr14 (61375707-61375520) | |
| 1076-1224, gnl|rheMac2|chr3 (72116220-72115827) | |
| 1076-1224, gnl|rn3|chr1 (168738431-168738036) | |
| 1076-1224, gnl|rn3|chr1 (168738021-168738210) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| mcp (0.170648) | |
| lun (0.150489) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| nbm (0.0993246) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) | |
| lun (0.150489) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| nbm (0.0993246) |