Ss1.1-Pig2-80O23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCCGCACAAGACCTTCCGCAAGCTGCGGCTTTTCGACACGCCGCATACCCCCAAGAGTT TGCTCTCTAAAGCTCGAGGAATTGATTCCAACTCTGTTAAACTCCGTGGTGGTTCTCTAT TCATGGATACAGAAAAATCAGGAAAAAGGGAATTTGATGTTCGACAGACTCCACAAGTGA ATATTAATCCTTTTACTCCAGATTCGGTGTTGCTTCATTCCTCAGGACAGTGTCGTAGAA GAAAGAGAACATACTGGAACGATTCCTGTGGTGAAGACATGGAAGCCAGTGATTATGAGT TTGAAGATGAAACCAGACCTGCTAAAAGAATTACAATTACTGAAAGCAATATGAAGTCAC GGTATACAACAGAATTTCATGAGCTAGAGAAGATTGGCTCTGGAGAATTTGGTTCTGTTT TTAAATGTGTGAAGAGGCTGGATGGATGCATTTATGCCATTAAGCGATCAAAAAAGCCAT TGGCTGGCTCTGTTGACGAGCAGAACGCTTTGAGAGAAGTATATGCTCATGCAGTGCTTG GACAACATTCTCATGTAGTTCGATATTTCTCTGCCTGGGCAGAAGATGATCATATGCTTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCCGCACAAGACCTTCCGCAAGCTGCGGCTTTTCGACACGCCGCATACCCCCAAGAGTT TGCTCTCTAAAGCTCGAGGAATTGATTCCAACTCTGTTAAACTCCGTGGTGGTTCTCTAT TCATGGATACAGAAAAATCAGGAAAAAGGGAATTTGATGTTCGACAGACTCCACAAGTGA ATATTAATCCTTTTACTCCAGATTCGGTGTTGCTTCATTCCTCAGGACAGTGTCGTAGAA GAAAGAGAACATACTGGAACGATTCCTGTGGTGAAGACATGGAAGCCAGTGATTATGAGT TTGAAGATGAAACCAGACCTGCTAAAAGAATTACAATTACTGAAAGCAATATGAAGTCAC GGTATACAACAGAATTTCATGAGCTAGAGAAGATTGGCTCTGGAGAATTTGGTTCTGTTT TTAAATGTGTGAAGAGGCTGGATGGATGCATTTATGCCATTAAGCGATCAAAAAAGCCAT TGGCTGGCTCTGTTGACGAGCAGAACGCTTTGAGAGAAGTATATGCTCATGCAGTGCTTG GACAACATTCTCATGTAGTTCGATATTTCTCTGCCTGGGCAGAAGATGATCATATGCTTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
| 52-262, gnl|bosTau2|chr15 (25871520-25871730) | |
| 52-262, gnl|canFam2|chr21 (36034701-36034539) | |
| 52-262, gnl|canFam2|chr21 (36034522-36034793) | |
| 52-262, gnl|canFam2|chr21 (36034740-36034532) | |
| 52-262, gnl|echTel1|scaffold_198694 (5892-6047) | |
| 52-262, gnl|echTel1|scaffold_198694 (6070-5782) | |
| 52-262, gnl|echTel1|scaffold_198694 (5840-6048) | |
| 52-262, gnl|galGal2|chr5 (6843379-6843097) | |
| 52-262, gnl|galGal2|chr5 (6843152-6843360) | |
| 52-262, gnl|hg17|chr11 (9553991-9554267) | |
| 52-262, gnl|Hg17|chr11 (9554006-9554216) | |
| 52-262, gnl|hg17|chr17 (22117692-22117851) | |
| 52-262, gnl|hg17|chr4 (96985-97189) | |
| 52-262, gnl|loxAfr1|scaffold_39745 (9880-9718) | |
| 52-262, gnl|loxAfr1|scaffold_39745 (9697-9947) | |
| 52-262, gnl|loxAfr1|scaffold_39745 (9919-9711) | |
| 52-262, gnl|mm7|chr7 (106039877-106039730) | |
| 52-262, gnl|mm7|chr7 (106039714-106039965) | |
| 52-262, gnl|mm7|chr7 (106039926-106039723) | |
| 52-262, gnl|Mm7|chr7 (106039722-106039932) | |
| 52-262, gnl|monDom2|scaffold_10 (59771426-59771693) | |
| 52-262, gnl|monDom2|scaffold_10 (59771644-59771438) | |
| 52-262, gnl|oryCun1|scaffold_197007 (9891-10040) | |
| 52-262, gnl|oryCun1|scaffold_197007 (10057-9807) | |
| 52-262, gnl|oryCun1|scaffold_197007 (9839-10047) | |
| 52-262, gnl|panTro1|chr3 (106435-106639) | |
| 52-262, gnl|panTro1|chr9 (9732706-9732982) | |
| 52-262, gnl|panTro1|chrUn_random (26978384-26978238) | |
| 52-262, gnl|rheMac2|chr1 (3871517-3871389) | |
| 52-262, gnl|rheMac2|chr1 (3871557-3871388) | |
| 52-262, gnl|rheMac2|chr14 (62373860-62373584) | |
| 52-262, gnl|rn3|chr1 (167882877-167882716) | |
| 52-262, gnl|rn3|chr1 (167882700-167882938) | |
| 52-262, gnl|rn3|chr1 (167882912-167882709) | |
| 52-262, gnl|xenTro1|scaffold_508 (549674-549406) | |
| 327-500, gnl|bosTau2|chr15 (25872678-25872851) | |
| 327-500, gnl|canFam2|chr21 (36035702-36035531) | |
| 327-500, gnl|canFam2|chr21 (36035706-36035532) | |
| 327-500, gnl|danRer3|chr18 (18105646-18105907) | |
| 327-500, gnl|danRer3|chr18 (18105732-18105907) | |
| 327-500, gnl|echTel1|scaffold_198694 (4922-5089) | |
| 327-500, gnl|echTel1|scaffold_198694 (4914-5088) | |
| 327-500, gnl|fr1|chrUn (268789267-268789092) | |
| 327-500, gnl|galGal2|chr5 (6842362-6842537) | |
| 327-500, gnl|Hg17|chr11 (9554610-9554783) | |
| 327-500, gnl|hg17|chr17 (22117443-22117609) | |
| 327-500, gnl|hg17|chr4 (96743-96919) | |
| 327-500, gnl|loxAfr1|scaffold_39745 (10813-10642) | |
| 327-500, gnl|loxAfr1|scaffold_39745 (10817-10642) | |
| 327-500, gnl|mm7|chr7 (106041433-106041266) | |
| 327-500, gnl|mm7|chr7 (106041440-106041266) | |
| 327-500, gnl|Mm7|chr7 (106041267-106041440) | |
| 327-500, gnl|monDom2|scaffold_10 (59772792-59772617) | |
| 327-500, gnl|oryCun1|scaffold_197007 (7503-7670) | |
| 327-500, gnl|oryCun1|scaffold_197007 (7496-7670) | |
| 327-500, gnl|panTro1|chr3 (106193-106369) | |
| 327-500, gnl|panTro1|chrUn_random (26978632-26978466) | |
| 327-500, gnl|rheMac2|chr1 (3871783-3871620) | |
| 327-500, gnl|rheMac2|chr1 (3871788-3871620) | |
| 327-500, gnl|rn3|chr1 (167884188-167884022) | |
| 327-500, gnl|rn3|chr1 (167884195-167884022) | |
| 327-500, gnl|tetNig1|chr13 (11536833-11536587) | |
| 327-500, gnl|tetNig1|chr13 (11536762-11536587) | |
| 327-500, gnl|xenTro1|scaffold_508 (548932-549107) |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 52-262, gnl|bosTau2|chr15 (25871520-25871730) | |
| 52-262, gnl|canFam2|chr21 (36034701-36034539) | |
| 52-262, gnl|canFam2|chr21 (36034522-36034793) | |
| 52-262, gnl|canFam2|chr21 (36034740-36034532) | |
| 52-262, gnl|echTel1|scaffold_198694 (5892-6047) | |
| 52-262, gnl|echTel1|scaffold_198694 (6070-5782) | |
| 52-262, gnl|echTel1|scaffold_198694 (5840-6048) | |
| 52-262, gnl|galGal2|chr5 (6843379-6843097) | |
| 52-262, gnl|galGal2|chr5 (6843152-6843360) | |
| 52-262, gnl|hg17|chr11 (9553991-9554267) | |
| 52-262, gnl|Hg17|chr11 (9554006-9554216) | |
| 52-262, gnl|hg17|chr17 (22117692-22117851) | |
| 52-262, gnl|hg17|chr4 (96985-97189) | |
| 52-262, gnl|loxAfr1|scaffold_39745 (9880-9718) | |
| 52-262, gnl|loxAfr1|scaffold_39745 (9697-9947) | |
| 52-262, gnl|loxAfr1|scaffold_39745 (9919-9711) | |
| 52-262, gnl|mm7|chr7 (106039877-106039730) | |
| 52-262, gnl|mm7|chr7 (106039714-106039965) | |
| 52-262, gnl|mm7|chr7 (106039926-106039723) | |
| 52-262, gnl|Mm7|chr7 (106039722-106039932) | |
| 52-262, gnl|monDom2|scaffold_10 (59771426-59771693) | |
| 52-262, gnl|monDom2|scaffold_10 (59771644-59771438) | |
| 52-262, gnl|oryCun1|scaffold_197007 (9891-10040) | |
| 52-262, gnl|oryCun1|scaffold_197007 (10057-9807) | |
| 52-262, gnl|oryCun1|scaffold_197007 (9839-10047) | |
| 52-262, gnl|panTro1|chr3 (106435-106639) | |
| 52-262, gnl|panTro1|chr9 (9732706-9732982) | |
| 52-262, gnl|panTro1|chrUn_random (26978384-26978238) | |
| 52-262, gnl|rheMac2|chr1 (3871517-3871389) | |
| 52-262, gnl|rheMac2|chr1 (3871557-3871388) | |
| 52-262, gnl|rheMac2|chr14 (62373860-62373584) | |
| 52-262, gnl|rn3|chr1 (167882877-167882716) | |
| 52-262, gnl|rn3|chr1 (167882700-167882938) | |
| 52-262, gnl|rn3|chr1 (167882912-167882709) | |
| 52-262, gnl|xenTro1|scaffold_508 (549674-549406) | |
| 327-500, gnl|bosTau2|chr15 (25872678-25872851) | |
| 327-500, gnl|canFam2|chr21 (36035702-36035531) | |
| 327-500, gnl|canFam2|chr21 (36035706-36035532) | |
| 327-500, gnl|danRer3|chr18 (18105646-18105907) | |
| 327-500, gnl|danRer3|chr18 (18105732-18105907) | |
| 327-500, gnl|echTel1|scaffold_198694 (4922-5089) | |
| 327-500, gnl|echTel1|scaffold_198694 (4914-5088) | |
| 327-500, gnl|fr1|chrUn (268789267-268789092) | |
| 327-500, gnl|galGal2|chr5 (6842362-6842537) | |
| 327-500, gnl|Hg17|chr11 (9554610-9554783) | |
| 327-500, gnl|hg17|chr17 (22117443-22117609) | |
| 327-500, gnl|hg17|chr4 (96743-96919) | |
| 327-500, gnl|loxAfr1|scaffold_39745 (10813-10642) | |
| 327-500, gnl|loxAfr1|scaffold_39745 (10817-10642) | |
| 327-500, gnl|mm7|chr7 (106041433-106041266) | |
| 327-500, gnl|mm7|chr7 (106041440-106041266) | |
| 327-500, gnl|Mm7|chr7 (106041267-106041440) | |
| 327-500, gnl|monDom2|scaffold_10 (59772792-59772617) | |
| 327-500, gnl|oryCun1|scaffold_197007 (7503-7670) | |
| 327-500, gnl|oryCun1|scaffold_197007 (7496-7670) | |
| 327-500, gnl|panTro1|chr3 (106193-106369) | |
| 327-500, gnl|panTro1|chrUn_random (26978632-26978466) | |
| 327-500, gnl|rheMac2|chr1 (3871783-3871620) | |
| 327-500, gnl|rheMac2|chr1 (3871788-3871620) | |
| 327-500, gnl|rn3|chr1 (167884188-167884022) | |
| 327-500, gnl|rn3|chr1 (167884195-167884022) | |
| 327-500, gnl|tetNig1|chr13 (11536833-11536587) | |
| 327-500, gnl|tetNig1|chr13 (11536762-11536587) | |
| 327-500, gnl|xenTro1|scaffold_508 (548932-549107) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |