Non-Coding RNA Search

Ss1.1-Pig2-81A16.5

Sequence:


               
               GGAATGACATGAACAAAGGAACCACTGATGTGCCAGAAGACTGGGGAGGAAGAGAGTGTA
TAGGGGCAGGGAGGGCAGCAGGGACTAAGGCTTCCTTCTCCACCCTAGGCCTGATGGAGA
GAAGAAGGCATATGTTCGACTAGCTCCTGACTATGATGCTTTGGATGTTGCTAACAAAGT
AAGCTTCCTTTACTACAAACTCCTTAACACCCCCCTTCCTGGGTGCAAATGATGTATCTC
TAAGCGACCAAAGCCTGAATCAAACTTCGGTGATTAGTCTCAACTGACTGACTGCACCCC
TGTCTTACCCCTTATCTTGTGCCCTCATTTTGCATTTTAACTATGACATTCCCACTTTAA
TCTTCACATTTCAGCTCCCAGTAACAAAGCTCCCTTTTGTTTTTCAGATTGGGATCATCT
AAACTGAGTCCAGCTGGCTAATTCTAAATATAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATGACATGAACAAAGGAACCACTGATGTGCCAGAAGACTGGGGAGGAAGAGAGTGTA
TAGGGGCAGGGAGGGCAGCAGGGACTAAGGCTTCCTTCTCCACCCTAGGCCTGATGGAGA
GAAGAAGGCATATGTTCGACTAGCTCCTGACTATGATGCTTTGGATGTTGCTAACAAAGT
AAGCTTCCTTTACTACAAACTCCTTAACACCCCCCTTCCTGGGTGCAAATGATGTATCTC
TAAGCGACCAAAGCCTGAATCAAACTTCGGTGATTAGTCTCAACTGACTGACTGCACCCC
TGTCTTACCCCTTATCTTGTGCCCTCATTTTGCATTTTAACTATGACATTCCCACTTTAA
TCTTCACATTTCAGCTCCCAGTAACAAAGCTCCCTTTTGTTTTTCAGATTGGGATCATCT
AAACTGAGTCCAGCTGGCTAATTCTAAATATAAAAG

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-306, gnl|bosTau2|chr19 (13689228-13689520)
               

               
               3-306, gnl|Hg17|chr17 (24074607-24074906)
               

               
               3-306, gnl|Mm7|chr11 (78262904-78262639)
               


               
               340-456, gnl|bosTau2|chr19 (13689529-13689644)
               

               
               340-456, gnl|Hg17|chr17 (24074915-24075060)
               

               
               340-456, gnl|Mm7|chr11 (78262630-78262524)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-306, gnl|bosTau2|chr19 (13689228-13689520)
               

               
               3-306, gnl|Hg17|chr17 (24074607-24074906)
               

               
               3-306, gnl|Mm7|chr11 (78262904-78262639)
               


               
               340-456, gnl|bosTau2|chr19 (13689529-13689644)
               

               
               340-456, gnl|Hg17|chr17 (24074915-24075060)
               

               
               340-456, gnl|Mm7|chr11 (78262630-78262524)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eru (0.120048)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)
               

               
               spc (0.113366)

	3-306, gnl\|bosTau2\|chr19 (13689228-13689520)
	3-306, gnl\|Hg17\|chr17 (24074607-24074906)
	3-306, gnl\|Mm7\|chr11 (78262904-78262639)

	340-456, gnl\|bosTau2\|chr19 (13689529-13689644)
	340-456, gnl\|Hg17\|chr17 (24074915-24075060)
	340-456, gnl\|Mm7\|chr11 (78262630-78262524)