Ss1.1-Pig2-81B22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAGCACGACCAGGACCGGGACGGCGCCCTCTCGCCGGCGGAGCTCGAGAGCCTCTTCAG CGTGTTTCCCGGCCCTCCTTGGGGTCCCCAGCTCCCCGACACCGTCCGCACCGAGGCCGG TCGGCTGCCCCTGCACGGGTACCTCTGCCAGTGGACCCTGGTGACCTACTTGGACGTCCG GCGCTGTCTCGAGCACCTTGGCTACCTGGGCTACCCCACCCTCTGCGAGCAGGACTCGCA GGCGCACGCCATCACAGTCACCAGGGAGAAGAGGCTGGACCAGGAAAAGGGGCAGACGCA GCGAAACGTCCTCTTGTGCAAGGTGCTGGGGGCCCGGGGAGTGGGCAAGTCCTCCTTCCT GCGGGCCTTCCTCGGCCGTGGCCTAGGGGATGCCCGGGGGCCCCCGGAGGAGCCCTCCGT CTACGCCATCGACACGGTGCGGGTCGGCGGCCAGGAGAAGTACCTGATCCTCTGCGAGGT GGCCGCGGACAGCCTGCTGACGGCCGAGGCCGACGCCTCCTGTGACGTTGCCTGCTTGAT GTTTGACAGCAGTGACCCTGGCTCCTTCGCTCTGTGCGCCAGCGTCTACAAGCGCCACTA CATGGACGGGCAGATCCCCTGCCTGTTCATCTCCTCCAAGGCCGACTTGCCCGAAGGCCT CTCGCCACCCGGCCTGTCCCCGTCGGAGTTCTGCCGCCGGCACCGGCTGCCCGCTCCGAC CCTGTTCTCCTGCGCTGGCCCGGCCGAGCCCAGCACGGCCGTCTTCGCCCGGCTTGCCAC CATGGCCACCTTCCCACACCTTGTCCACGGGGAGCTGCACACCACCTCCTTCTGGCTCCG GGTGGCGCTGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAGCACGACCAGGACCGGGACGGCGCCCTCTCGCCGGCGGAGCTCGAGAGCCTCTTCAG CGTGTTTCCCGGCCCTCCTTGGGGTCCCCAGCTCCCCGACACCGTCCGCACCGAGGCCGG TCGGCTGCCCCTGCACGGGTACCTCTGCCAGTGGACCCTGGTGACCTACTTGGACGTCCG GCGCTGTCTCGAGCACCTTGGCTACCTGGGCTACCCCACCCTCTGCGAGCAGGACTCGCA GGCGCACGCCATCACAGTCACCAGGGAGAAGAGGCTGGACCAGGAAAAGGGGCAGACGCA GCGAAACGTCCTCTTGTGCAAGGTGCTGGGGGCCCGGGGAGTGGGCAAGTCCTCCTTCCT GCGGGCCTTCCTCGGCCGTGGCCTAGGGGATGCCCGGGGGCCCCCGGAGGAGCCCTCCGT CTACGCCATCGACACGGTGCGGGTCGGCGGCCAGGAGAAGTACCTGATCCTCTGCGAGGT GGCCGCGGACAGCCTGCTGACGGCCGAGGCCGACGCCTCCTGTGACGTTGCCTGCTTGAT GTTTGACAGCAGTGACCCTGGCTCCTTCGCTCTGTGCGCCAGCGTCTACAAGCGCCACTA CATGGACGGGCAGATCCCCTGCCTGTTCATCTCCTCCAAGGCCGACTTGCCCGAAGGCCT CTCGCCACCCGGCCTGTCCCCGTCGGAGTTCTGCCGCCGGCACCGGCTGCCCGCTCCGAC CCTGTTCTCCTGCGCTGGCCCGGCCGAGCCCAGCACGGCCGTCTTCGCCCGGCTTGCCAC CATGGCCACCTTCCCACACCTTGTCCACGGGGAGCTGCACACCACCTCCTTCTGGCTCCG GGTGGCGCTGGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 11-156, gnl|bosTau2|chr25 (1225039-1224894) | |
| 11-156, gnl|canFam2|chr6 (42944049-42943936) | |
| 11-156, gnl|danRer3|chrNA (20524560-20524673) | |
| 11-156, gnl|dasNov1|scaffold_1277 (98181-98065) | |
| 11-156, gnl|echTel1|scaffold_301683 (842-957) | |
| 11-156, gnl|fr1|chrUn (101989733-101989620) | |
| 11-156, gnl|galGal2|chr14 (1952554-1952434) | |
| 11-156, gnl|hg17|chr16 (661854-661967) | |
| 11-156, gnl|Hg17|chr16 (661858-662003) | |
| 11-156, gnl|mm7|chr17 (24024227-24024114) | |
| 11-156, gnl|Mm7|chr17 (24024221-24024076) | |
| 11-156, gnl|monDom2|scaffold_49 (9739887-9740003) | |
| 11-156, gnl|panTro1|chr18 (702173-702286) | |
| 11-156, gnl|rheMac2|chr16 (27540802-27540918) | |
| 11-156, gnl|rn3|chr10 (15106470-15106357) | |
| 11-156, gnl|tetNig1|chr2 (4770092-4769979) | |
| 11-156, gnl|xenTro1|scaffold_1782 (35993-36109) | |
| 253-389, gnl|bosTau2|chr25 (1224631-1224495) | |
| 253-389, gnl|canFam2|chr6 (42943672-42943501) | |
| 253-389, gnl|danRer3|chrNA (20526663-20526813) | |
| 253-389, gnl|fr1|chrUn (101989009-101988851) | |
| 253-389, gnl|galGal2|chr14 (1952155-1951986) | |
| 253-389, gnl|hg17|chr16 (662238-662401) | |
| 253-389, gnl|Hg17|chr16 (662251-662386) | |
| 253-389, gnl|mm7|chr17 (24023827-24023664) | |
| 253-389, gnl|Mm7|chr17 (24023811-24023677) | |
| 253-389, gnl|monDom2|scaffold_49 (9740321-9740476) | |
| 253-389, gnl|panTro1|chr18 (702560-702723) | |
| 253-389, gnl|rheMac2|chr20 (664101-664264) | |
| 253-389, gnl|rn3|chr10 (15106072-15105909) | |
| 253-389, gnl|tetNig1|chr2 (4769355-4769185) | |
| 253-389, gnl|xenTro1|scaffold_1782 (41185-41324) | |
| 591-795, gnl|bosTau2|chr25 (1224017-1223813) | |
| 591-795, gnl|canFam2|chr6 (42942888-42942671) | |
| 591-795, gnl|danRer3|chrNA (20532879-20533096) | |
| 591-795, gnl|dasNov1|scaffold_1277 (90839-90623) | |
| 591-795, gnl|echTel1|scaffold_276949 (46006-46221) | |
| 591-795, gnl|fr1|chrUn (101987982-101987773) | |
| 591-795, gnl|galGal2|chr14 (1950930-1950711) | |
| 591-795, gnl|hg17|chr16 (662923-663143) | |
| 591-795, gnl|Hg17|chr16 (662927-663131) | |
| 591-795, gnl|loxAfr1|scaffold_87960 (12660-12441) | |
| 591-795, gnl|mm7|chr17 (24023139-24022924) | |
| 591-795, gnl|Mm7|chr17 (24023133-24022929) | |
| 591-795, gnl|monDom2|scaffold_49 (9742236-9742454) | |
| 591-795, gnl|oryCun1|scaffold_115482 (15585-15366) | |
| 591-795, gnl|panTro1|chr18 (703274-703494) | |
| 591-795, gnl|rheMac2|chr20 (664783-665003) | |
| 591-795, gnl|rn3|chr10 (15105404-15105185) | |
| 591-795, gnl|tetNig1|chr2 (4768453-4768237) | |
| 591-795, gnl|xenTro1|scaffold_1782 (43080-43293) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 11-156, gnl|bosTau2|chr25 (1225039-1224894) | |
| 11-156, gnl|canFam2|chr6 (42944049-42943936) | |
| 11-156, gnl|danRer3|chrNA (20524560-20524673) | |
| 11-156, gnl|dasNov1|scaffold_1277 (98181-98065) | |
| 11-156, gnl|echTel1|scaffold_301683 (842-957) | |
| 11-156, gnl|fr1|chrUn (101989733-101989620) | |
| 11-156, gnl|galGal2|chr14 (1952554-1952434) | |
| 11-156, gnl|hg17|chr16 (661854-661967) | |
| 11-156, gnl|Hg17|chr16 (661858-662003) | |
| 11-156, gnl|mm7|chr17 (24024227-24024114) | |
| 11-156, gnl|Mm7|chr17 (24024221-24024076) | |
| 11-156, gnl|monDom2|scaffold_49 (9739887-9740003) | |
| 11-156, gnl|panTro1|chr18 (702173-702286) | |
| 11-156, gnl|rheMac2|chr16 (27540802-27540918) | |
| 11-156, gnl|rn3|chr10 (15106470-15106357) | |
| 11-156, gnl|tetNig1|chr2 (4770092-4769979) | |
| 11-156, gnl|xenTro1|scaffold_1782 (35993-36109) | |
| 253-389, gnl|bosTau2|chr25 (1224631-1224495) | |
| 253-389, gnl|canFam2|chr6 (42943672-42943501) | |
| 253-389, gnl|danRer3|chrNA (20526663-20526813) | |
| 253-389, gnl|fr1|chrUn (101989009-101988851) | |
| 253-389, gnl|galGal2|chr14 (1952155-1951986) | |
| 253-389, gnl|hg17|chr16 (662238-662401) | |
| 253-389, gnl|Hg17|chr16 (662251-662386) | |
| 253-389, gnl|mm7|chr17 (24023827-24023664) | |
| 253-389, gnl|Mm7|chr17 (24023811-24023677) | |
| 253-389, gnl|monDom2|scaffold_49 (9740321-9740476) | |
| 253-389, gnl|panTro1|chr18 (702560-702723) | |
| 253-389, gnl|rheMac2|chr20 (664101-664264) | |
| 253-389, gnl|rn3|chr10 (15106072-15105909) | |
| 253-389, gnl|tetNig1|chr2 (4769355-4769185) | |
| 253-389, gnl|xenTro1|scaffold_1782 (41185-41324) | |
| 591-795, gnl|bosTau2|chr25 (1224017-1223813) | |
| 591-795, gnl|canFam2|chr6 (42942888-42942671) | |
| 591-795, gnl|danRer3|chrNA (20532879-20533096) | |
| 591-795, gnl|dasNov1|scaffold_1277 (90839-90623) | |
| 591-795, gnl|echTel1|scaffold_276949 (46006-46221) | |
| 591-795, gnl|fr1|chrUn (101987982-101987773) | |
| 591-795, gnl|galGal2|chr14 (1950930-1950711) | |
| 591-795, gnl|hg17|chr16 (662923-663143) | |
| 591-795, gnl|Hg17|chr16 (662927-663131) | |
| 591-795, gnl|loxAfr1|scaffold_87960 (12660-12441) | |
| 591-795, gnl|mm7|chr17 (24023139-24022924) | |
| 591-795, gnl|Mm7|chr17 (24023133-24022929) | |
| 591-795, gnl|monDom2|scaffold_49 (9742236-9742454) | |
| 591-795, gnl|oryCun1|scaffold_115482 (15585-15366) | |
| 591-795, gnl|panTro1|chr18 (703274-703494) | |
| 591-795, gnl|rheMac2|chr20 (664783-665003) | |
| 591-795, gnl|rn3|chr10 (15105404-15105185) | |
| 591-795, gnl|tetNig1|chr2 (4768453-4768237) | |
| 591-795, gnl|xenTro1|scaffold_1782 (43080-43293) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) | |
| eru (0.120048) |