Ss1.1-Pig2-81F17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGCATCGGCGGTCGCGAGCGGCAGCTGTCAGGCCACCGAGGTCCAAGCTGCACTTGCC GCCCGGTTGAGGACGGGGAGGCGGCAGGAGCGGTGACAGCGTAGCCGAGGAGCCGAACTG CCGGCACGCAAAGCTGACCTGCTTGGCCCCCGCCGCCCTCTCGCGCCTCTCTCCCATTGT ATTGGAATCCTGAAAAGAGAGAATATAACAACAACAAGAAAAAGACTTAAGATTGTGACA AAGACCCAGCTGGGTTCCCTTGGTTATAAACTCCTCTCCATCTGGTGCTGCAACAATGAG TGGGAAATCACTGCTCTTAAAGGTCATTCTTTTGGGTGATGGTGGAGTTGGGAAAAGCTC GCTCATGAACCGTTATGTAACCAATAAATTTGACTCCCAGGCTTTTCACACCATAGGGGT AGAGTTCTTAAATCGAGATCTGGAGGTAGATGGACGCTTTGTAACTCTCCAGATATGGGA CACTGCAGGGCAGGAACGTTTCAAGAGCCTTAGGACACCCTTCTACAGAGGGGCAGACTG CTGCCTCTTGACCTTCAGCGTGGATGACCGGCAGAGCTTTGAGAACCTCGGTAATTGGCA GAAAGAATTCATCTACTACGCAGATGTGAAAGACCCTGAGCACTTCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGCATCGGCGGTCGCGAGCGGCAGCTGTCAGGCCACCGAGGTCCAAGCTGCACTTGCC GCCCGGTTGAGGACGGGGAGGCGGCAGGAGCGGTGACAGCGTAGCCGAGGAGCCGAACTG CCGGCACGCAAAGCTGACCTGCTTGGCCCCCGCCGCCCTCTCGCGCCTCTCTCCCATTGT ATTGGAATCCTGAAAAGAGAGAATATAACAACAACAAGAAAAAGACTTAAGATTGTGACA AAGACCCAGCTGGGTTCCCTTGGTTATAAACTCCTCTCCATCTGGTGCTGCAACAATGAG TGGGAAATCACTGCTCTTAAAGGTCATTCTTTTGGGTGATGGTGGAGTTGGGAAAAGCTC GCTCATGAACCGTTATGTAACCAATAAATTTGACTCCCAGGCTTTTCACACCATAGGGGT AGAGTTCTTAAATCGAGATCTGGAGGTAGATGGACGCTTTGTAACTCTCCAGATATGGGA CACTGCAGGGCAGGAACGTTTCAAGAGCCTTAGGACACCCTTCTACAGAGGGGCAGACTG CTGCCTCTTGACCTTCAGCGTGGATGACCGGCAGAGCTTTGAGAACCTCGGTAATTGGCA GAAAGAATTCATCTACTACGCAGATGTGAAAGACCCTGAGCACTTCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 68-185, - strand, RNAz p=0.860476 | |
| 253-371, + strand, RNAz p=0.78971 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 68-185, - strand, RNAz p=0.860476 | |
| 253-371, + strand, RNAz p=0.78971 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-185, gnl|bosTau2|chrX (16512717-16512533) | |
| 1-185, gnl|Hg17|chrX (102893319-102893135) | |
| 1-185, gnl|Mm7|chrX (131587793-131587606) | |
| 253-648, gnl|bosTau2|chrX (16506218-16505823) | |
| 253-648, gnl|canFam2|chrX (80298189-80298797) | |
| 253-648, gnl|danRer3|chr22 (36275866-36276476) | |
| 253-648, gnl|dasNov1|scaffold_11047 (23400-24002) | |
| 253-648, gnl|echTel1|scaffold_287331 (46422-47030) | |
| 253-648, gnl|fr1|chrUn (233597121-233597726) | |
| 253-648, gnl|galGal2|chr4 (1840171-1839563) | |
| 253-648, gnl|hg17|chrX (102886253-102886861) | |
| 253-648, gnl|Hg17|chrX (102886902-102886507) | |
| 253-648, gnl|loxAfr1|scaffold_24742 (15900-16507) | |
| 253-648, gnl|mm7|chrX (131580256-131580863) | |
| 253-648, gnl|Mm7|chrX (131580905-131580510) | |
| 253-648, gnl|monDom2|scaffold_146 (1316488-1315881) | |
| 253-648, gnl|oryCun1|scaffold_198289 (158209-158817) | |
| 253-648, gnl|panTro1|chrX (106412248-106412856) | |
| 253-648, gnl|rheMac2|chrX (102380070-102380678) | |
| 253-648, gnl|rn3|chrX (124601318-124601926) | |
| 253-648, gnl|tetNig1|chr2 (10328374-10328954) | |
| 253-648, gnl|xenTro1|scaffold_561 (574862-574254) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-185, gnl|bosTau2|chrX (16512717-16512533) | |
| 1-185, gnl|Hg17|chrX (102893319-102893135) | |
| 1-185, gnl|Mm7|chrX (131587793-131587606) | |
| 253-648, gnl|bosTau2|chrX (16506218-16505823) | |
| 253-648, gnl|canFam2|chrX (80298189-80298797) | |
| 253-648, gnl|danRer3|chr22 (36275866-36276476) | |
| 253-648, gnl|dasNov1|scaffold_11047 (23400-24002) | |
| 253-648, gnl|echTel1|scaffold_287331 (46422-47030) | |
| 253-648, gnl|fr1|chrUn (233597121-233597726) | |
| 253-648, gnl|galGal2|chr4 (1840171-1839563) | |
| 253-648, gnl|hg17|chrX (102886253-102886861) | |
| 253-648, gnl|Hg17|chrX (102886902-102886507) | |
| 253-648, gnl|loxAfr1|scaffold_24742 (15900-16507) | |
| 253-648, gnl|mm7|chrX (131580256-131580863) | |
| 253-648, gnl|Mm7|chrX (131580905-131580510) | |
| 253-648, gnl|monDom2|scaffold_146 (1316488-1315881) | |
| 253-648, gnl|oryCun1|scaffold_198289 (158209-158817) | |
| 253-648, gnl|panTro1|chrX (106412248-106412856) | |
| 253-648, gnl|rheMac2|chrX (102380070-102380678) | |
| 253-648, gnl|rn3|chrX (124601318-124601926) | |
| 253-648, gnl|tetNig1|chr2 (10328374-10328954) | |
| 253-648, gnl|xenTro1|scaffold_561 (574862-574254) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) |