Ss1.1-Pig2-81F21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAACCATCATCCGCATCTTCAAAAGACATGGTGCTGTCCAGTTGTGTACCCCACTACTG CTTCCCCGAAATAGAAAAATATACGAGCACAACGAAGCTGCCTTGTTCATGGACCACAGC GGGATGCTGGTGATGCTTCCTTTCGACCTGCGGGTTCCTTTTGCAAGATATGTGGCAAGA AATAATATATTGAATTTAAAACGATACTGCATAGAACGTGTGTTCAGACCTCGCAAATTG GATCGATTTCATCCCAAAGAACTTCTGGAATGTGCATTTGATATTGTCACCTCTACCACC AACAGCTCTCTTCCCACTGCTGAAATCATCTATACGATCTATGAAATCATCCAGGACTTC CCGGCACTTCAGGAAAGAAATTACAGTATTTACTTGAATCATACCATGCTACTGAAAGCA ATACTCTTACACTGTGGGATCCCAGAAGATAAGCTCAACCAAGTCTATGTTATTCTATAT GATGCCGTGACAGAAAAGCTGACAAGGAGAGAAGTGGAAGCTAAATTTTGTAATCTGTCT TTGTCGTCGAATAGTCTATGTCGACTCTACAAATTTATTGAGCAGAAGGGAGAGTTGCAA GATCTAACACCCACAATCAATTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAACCATCATCCGCATCTTCAAAAGACATGGTGCTGTCCAGTTGTGTACCCCACTACTG CTTCCCCGAAATAGAAAAATATACGAGCACAACGAAGCTGCCTTGTTCATGGACCACAGC GGGATGCTGGTGATGCTTCCTTTCGACCTGCGGGTTCCTTTTGCAAGATATGTGGCAAGA AATAATATATTGAATTTAAAACGATACTGCATAGAACGTGTGTTCAGACCTCGCAAATTG GATCGATTTCATCCCAAAGAACTTCTGGAATGTGCATTTGATATTGTCACCTCTACCACC AACAGCTCTCTTCCCACTGCTGAAATCATCTATACGATCTATGAAATCATCCAGGACTTC CCGGCACTTCAGGAAAGAAATTACAGTATTTACTTGAATCATACCATGCTACTGAAAGCA ATACTCTTACACTGTGGGATCCCAGAAGATAAGCTCAACCAAGTCTATGTTATTCTATAT GATGCCGTGACAGAAAAGCTGACAAGGAGAGAAGTGGAAGCTAAATTTTGTAATCTGTCT TTGTCGTCGAATAGTCTATGTCGACTCTACAAATTTATTGAGCAGAAGGGAGAGTTGCAA GATCTAACACCCACAATCAATTCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 242-361, - strand, RNAz p=0.577215 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 242-361, - strand, RNAz p=0.577215 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 31-155, gnl|bosTau2|chr10 (23282231-23282107) | |
| 31-155, gnl|canFam2|chr30 (10203719-10203798) | |
| 31-155, gnl|danRer3|chr17 (25276438-25276517) | |
| 31-155, gnl|dasNov1|scaffold_1055 (117263-117184) | |
| 31-155, gnl|echTel1|scaffold_316524 (37633-37554) | |
| 31-155, gnl|fr1|chrUn (81634993-81634914) | |
| 31-155, gnl|galGal2|chr5 (26380266-26380187) | |
| 31-155, gnl|hg17|chr15 (38082685-38082764) | |
| 31-155, gnl|Hg17|chr15 (38082685-38082809) | |
| 31-155, gnl|loxAfr1|scaffold_2762 (62317-62238) | |
| 31-155, gnl|mm7|chr2 (118192260-118192339) | |
| 31-155, gnl|Mm7|chr2 (118192260-118192384) | |
| 31-155, gnl|monDom2|scaffold_12 (2731534-2731455) | |
| 31-155, gnl|panTro1|chr16 (37966730-37966809) | |
| 31-155, gnl|rheMac2|chr7 (18353183-18353262) | |
| 31-155, gnl|rn3|chr3 (104778183-104778262) | |
| 31-155, gnl|tetNig1|chr10 (4039922-4039843) | |
| 31-155, gnl|xenTro1|scaffold_218 (114384-114305) | |
| 203-373, gnl|bosTau2|chr10 (23277406-23277236) | |
| 203-373, gnl|canFam2|chr30 (10207509-10207694) | |
| 203-373, gnl|danRer3|chr17 (25282793-25282967) | |
| 203-373, gnl|dasNov1|scaffold_1055 (113027-112842) | |
| 203-373, gnl|fr1|chrUn (81634413-81634237) | |
| 203-373, gnl|galGal2|chr5 (26378906-26378721) | |
| 203-373, gnl|hg17|chr15 (38087512-38087697) | |
| 203-373, gnl|Hg17|chr15 (38087519-38087689) | |
| 203-373, gnl|loxAfr1|scaffold_2762 (57697-57512) | |
| 203-373, gnl|mm7|chr2 (118196618-118196802) | |
| 203-373, gnl|Mm7|chr2 (118196624-118196794) | |
| 203-373, gnl|monDom2|scaffold_12 (2726353-2726168) | |
| 203-373, gnl|oryCun1|scaffold_105257 (527-341) | |
| 203-373, gnl|panTro1|chr16 (37971554-37971739) | |
| 203-373, gnl|rheMac2|chr7 (18357749-18357934) | |
| 203-373, gnl|rn3|chr3 (104781983-104782167) | |
| 203-373, gnl|tetNig1|chr10 (4039343-4039161) | |
| 203-373, gnl|xenTro1|scaffold_218 (113235-113052) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 31-155, gnl|bosTau2|chr10 (23282231-23282107) | |
| 31-155, gnl|canFam2|chr30 (10203719-10203798) | |
| 31-155, gnl|danRer3|chr17 (25276438-25276517) | |
| 31-155, gnl|dasNov1|scaffold_1055 (117263-117184) | |
| 31-155, gnl|echTel1|scaffold_316524 (37633-37554) | |
| 31-155, gnl|fr1|chrUn (81634993-81634914) | |
| 31-155, gnl|galGal2|chr5 (26380266-26380187) | |
| 31-155, gnl|hg17|chr15 (38082685-38082764) | |
| 31-155, gnl|Hg17|chr15 (38082685-38082809) | |
| 31-155, gnl|loxAfr1|scaffold_2762 (62317-62238) | |
| 31-155, gnl|mm7|chr2 (118192260-118192339) | |
| 31-155, gnl|Mm7|chr2 (118192260-118192384) | |
| 31-155, gnl|monDom2|scaffold_12 (2731534-2731455) | |
| 31-155, gnl|panTro1|chr16 (37966730-37966809) | |
| 31-155, gnl|rheMac2|chr7 (18353183-18353262) | |
| 31-155, gnl|rn3|chr3 (104778183-104778262) | |
| 31-155, gnl|tetNig1|chr10 (4039922-4039843) | |
| 31-155, gnl|xenTro1|scaffold_218 (114384-114305) | |
| 203-373, gnl|bosTau2|chr10 (23277406-23277236) | |
| 203-373, gnl|canFam2|chr30 (10207509-10207694) | |
| 203-373, gnl|danRer3|chr17 (25282793-25282967) | |
| 203-373, gnl|dasNov1|scaffold_1055 (113027-112842) | |
| 203-373, gnl|fr1|chrUn (81634413-81634237) | |
| 203-373, gnl|galGal2|chr5 (26378906-26378721) | |
| 203-373, gnl|hg17|chr15 (38087512-38087697) | |
| 203-373, gnl|Hg17|chr15 (38087519-38087689) | |
| 203-373, gnl|loxAfr1|scaffold_2762 (57697-57512) | |
| 203-373, gnl|mm7|chr2 (118196618-118196802) | |
| 203-373, gnl|Mm7|chr2 (118196624-118196794) | |
| 203-373, gnl|monDom2|scaffold_12 (2726353-2726168) | |
| 203-373, gnl|oryCun1|scaffold_105257 (527-341) | |
| 203-373, gnl|panTro1|chr16 (37971554-37971739) | |
| 203-373, gnl|rheMac2|chr7 (18357749-18357934) | |
| 203-373, gnl|rn3|chr3 (104781983-104782167) | |
| 203-373, gnl|tetNig1|chr10 (4039343-4039161) | |
| 203-373, gnl|xenTro1|scaffold_218 (113235-113052) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) |