Non-Coding RNA Search

Ss1.1-Pig2-81H18.5

Sequence:


               
               GGTCACCAAGGTCAGCAATGTCTACTCTCAAACTAATGGGGCTCAAATACAAGGCTGCAG
TGTGACACTGCCCCAGTCCGTGTCCAAACAAGCTGTGGGGCATGAAGAGAATACCCAGTG
TTGTAAAGTTGCCAATGACAATGTGATACAATCTTCAGAAACTTGTTCCAGTCAGGACTC
CTCTACCACTACCTCTGCTTTGCCTCCTACCTGGACTTCAAGCACTTCTGTGTCCCAAAA
GCAGAAAAGAAAGACTGGCACGAAGCCAAGTACCGAACCACAAAGTGAAGCTGTCACAAA
TGTTGAGTCCCAAAACACTAACAGGAACAACTCAACTGCCTTGCAGTTAGCTAGTCGACC
TCCTGATTCTGGCACAGAGGGCCCCACATCTAAAAGAGCACATTCAAAGCCAAATGCTTT
TTTCACTTTGCCTGACCCGATTGTCAGAGCAAGGCAGAGGCCGGAGTTAATCTGAAGAGC
ACCACTTCTCTCTCTCCTGAAAAAAATTGCCACTGAATGTGGACTCTTATAAAATTTAAA
AATGTTTCAATTCATAAACGCTAATTGTTGAACTGGTGTCCTAGAAGAATTGTCCACAGG
AGCCCAAGCAGAAGTCTCTGATACTGGTGGAACTGGCTCAATCACACCATGGTTCATCCC
CTTTTAAAACCAATTTTCTTTTTTTTTCTTTTTTTTGTTTATATATTATTATTATTATTT
TTTGTCTTCTGGCCTACAAGTATTTTTTTTTTAAAGAAGGGGAAAAAAAGCCTACATTGG
CATCAAGTTCTGTATCAATCCATGTTACATTTCCATCCATGATTTAAAACTGTAGAATCT
TGAATAATCTATATCACTTTAACAAATAAATGTTTTACTAAGACAGAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCACCAAGGTCAGCAATGTCTACTCTCAAACTAATGGGGCTCAAATACAAGGCTGCAG
TGTGACACTGCCCCAGTCCGTGTCCAAACAAGCTGTGGGGCATGAAGAGAATACCCAGTG
TTGTAAAGTTGCCAATGACAATGTGATACAATCTTCAGAAACTTGTTCCAGTCAGGACTC
CTCTACCACTACCTCTGCTTTGCCTCCTACCTGGACTTCAAGCACTTCTGTGTCCCAAAA
GCAGAAAAGAAAGACTGGCACGAAGCCAAGTACCGAACCACAAAGTGAAGCTGTCACAAA
TGTTGAGTCCCAAAACACTAACAGGAACAACTCAACTGCCTTGCAGTTAGCTAGTCGACC
TCCTGATTCTGGCACAGAGGGCCCCACATCTAAAAGAGCACATTCAAAGCCAAATGCTTT
TTTCACTTTGCCTGACCCGATTGTCAGAGCAAGGCAGAGGCCGGAGTTAATCTGAAGAGC
ACCACTTCTCTCTCTCCTGAAAAAAATTGCCACTGAATGTGGACTCTTATAAAATTTAAA
AATGTTTCAATTCATAAACGCTAATTGTTGAACTGGTGTCCTAGAAGAATTGTCCACAGG
AGCCCAAGCAGAAGTCTCTGATACTGGTGGAACTGGCTCAATCACACCATGGTTCATCCC
CTTTTAAAACCAATTTTCTTTTTTTTTCTTTTTTTTGTTTATATATTATTATTATTATTT
TTTGTCTTCTGGCCTACAAGTATTTTTTTTTTAAAGAAGGGGAAAAAAAGCCTACATTGG
CATCAAGTTCTGTATCAATCCATGTTACATTTCCATCCATGATTTAAAACTGTAGAATCT
TGAATAATCTATATCACTTTAACAAATAAATGTTTTACTAAGACAGAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               728-895, gnl|bosTau2|chr26 (27868086-27867919)
               

               
               728-895, gnl|Hg17|chr14 (41443343-41443490)
               

               
               728-895, gnl|Mm7|chr12 (59795438-59795598)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               728-895, gnl|bosTau2|chr26 (27868086-27867919)
               

               
               728-895, gnl|Hg17|chr14 (41443343-41443490)
               

               
               728-895, gnl|Mm7|chr12 (59795438-59795598)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ret (0.128733)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)

	728-895, gnl\|bosTau2\|chr26 (27868086-27867919)
	728-895, gnl\|Hg17\|chr14 (41443343-41443490)
	728-895, gnl\|Mm7\|chr12 (59795438-59795598)