Ss1.1-Pig2-82E01.5
|
CCAGGGCCAGGGCCGCGGCCCCATGCATTATCTTCTTTGATGAACTCGACTCCTTGGCCC
CAAGCCGGGGGCGAAGTGGAGACTCCGGAGGTGTGATGGACAGGGTGGTGTCCCAGCTCC
TGGCCGAGCTGGATGGGCTTCACAGCACTCAGGATGTGTTTGTGATCGGAGCCACCAATA
GACCAGACCTTCTGGACCCTGCCCTTCTGCGGCCTGGCAGGTTTGACAAGCTGGTGTTTG
TGGGAGCGAGCGAGGACCGTGCCTCCCAGCTCCGTGTTCTGAGCGCCATCACGCGCAAAT
TCAGGCTAGAGCCCTCTGTGAGCCTGGTGGCCGTGTTGGACCACTGCCCACCCCAGCTGA
CGGGTGCAGACCTCTACTCCCTGTGCGCTGATGCCATGACAGCTGCCCTGAAACGCAGGG
TTCGGGACCTGGAGGATGGCCTGGAGCCGGGGAGCTCAGCACTGCTGCTCACCATGGAGG
ACCTGCTGCAGGCCGCGGCCCGGCTGCAGCCCTCAGTCAGCGAGCACGAGCTGCTCCGCT
ACAAGCGCATCCAGCGCAAGTTTGCCGCCTGCTAGG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCAGGGCCAGGGCCGCGGCCCCATGCATTATCTTCTTTGATGAACTCGACTCCTTGGCCC
CAAGCCGGGGGCGAAGTGGAGACTCCGGAGGTGTGATGGACAGGGTGGTGTCCCAGCTCC
TGGCCGAGCTGGATGGGCTTCACAGCACTCAGGATGTGTTTGTGATCGGAGCCACCAATA
GACCAGACCTTCTGGACCCTGCCCTTCTGCGGCCTGGCAGGTTTGACAAGCTGGTGTTTG
TGGGAGCGAGCGAGGACCGTGCCTCCCAGCTCCGTGTTCTGAGCGCCATCACGCGCAAAT
TCAGGCTAGAGCCCTCTGTGAGCCTGGTGGCCGTGTTGGACCACTGCCCACCCCAGCTGA
CGGGTGCAGACCTCTACTCCCTGTGCGCTGATGCCATGACAGCTGCCCTGAAACGCAGGG
TTCGGGACCTGGAGGATGGCCTGGAGCCGGGGAGCTCAGCACTGCTGCTCACCATGGAGG
ACCTGCTGCAGGCCGCGGCCCGGCTGCAGCCCTCAGTCAGCGAGCACGAGCTGCTCCGCT
ACAAGCGCATCCAGCGCAAGTTTGCCGCCTGCTAGG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
456-552, - strand, RNAmicro p=0.996947 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
456-552, - strand, RNAmicro p=0.996947 |
|
101-225, gnl|bosTau2|chr23 (13023233-13023109) |
|
101-225, gnl|Hg17|chr6 (43041087-43040963) |
|
101-225, gnl|Mm7|chr17 (44853575-44853699) |
| |
|
438-576, gnl|bosTau2|chr23 (13022459-13022321) |
|
438-576, gnl|canFam2|chr12 (14507141-14507309) |
|
438-576, gnl|danRer3|chrNA (114235995-114235803) |
|
438-576, gnl|dasNov1|scaffold_24313 (13537-13377) |
|
438-576, gnl|echTel1|scaffold_323377 (118803-118961) |
|
438-576, gnl|galGal2|chr14 (16216485-16216325) |
|
438-576, gnl|hg17|chr6 (43040037-43040196) |
|
438-576, gnl|Hg17|chr6 (43040188-43040050) |
|
438-576, gnl|loxAfr1|scaffold_48555 (12530-12690) |
|
438-576, gnl|mm7|chr17 (44854527-44854367) |
|
438-576, gnl|Mm7|chr17 (44854374-44854512) |
|
438-576, gnl|monDom2|scaffold_0 (198686794-198686644) |
|
438-576, gnl|oryCun1|scaffold_117209 (4129-3965) |
|
438-576, gnl|panTro1|chr5 (43635703-43635861) |
|
438-576, gnl|rheMac2|chr4 (42850779-42850938) |
|
438-576, gnl|rn3|chr9 (10128083-10128241) |
|
438-576, gnl|xenTro1|scaffold_1981 (23926-23769) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
101-225, gnl|bosTau2|chr23 (13023233-13023109) |
|
101-225, gnl|Hg17|chr6 (43041087-43040963) |
|
101-225, gnl|Mm7|chr17 (44853575-44853699) |
| |
|
438-576, gnl|bosTau2|chr23 (13022459-13022321) |
|
438-576, gnl|canFam2|chr12 (14507141-14507309) |
|
438-576, gnl|danRer3|chrNA (114235995-114235803) |
|
438-576, gnl|dasNov1|scaffold_24313 (13537-13377) |
|
438-576, gnl|echTel1|scaffold_323377 (118803-118961) |
|
438-576, gnl|galGal2|chr14 (16216485-16216325) |
|
438-576, gnl|hg17|chr6 (43040037-43040196) |
|
438-576, gnl|Hg17|chr6 (43040188-43040050) |
|
438-576, gnl|loxAfr1|scaffold_48555 (12530-12690) |
|
438-576, gnl|mm7|chr17 (44854527-44854367) |
|
438-576, gnl|Mm7|chr17 (44854374-44854512) |
|
438-576, gnl|monDom2|scaffold_0 (198686794-198686644) |
|
438-576, gnl|oryCun1|scaffold_117209 (4129-3965) |
|
438-576, gnl|panTro1|chr5 (43635703-43635861) |
|
438-576, gnl|rheMac2|chr4 (42850779-42850938) |
|
438-576, gnl|rn3|chr9 (10128083-10128241) |
|
438-576, gnl|xenTro1|scaffold_1981 (23926-23769) |
|
nco (0.161734) |
|
med (0.116252) |
|
nco (0.161734) |
|
med (0.116252) |
