Non-Coding RNA Search

Ss1.1-Pig2-83G08.5

Sequence:


               
               CCCCTCCACTGCCCACTTCATCCTTGTTGCTTGAATCGTCTGGGTCAGGTACCCTCCTCT
GGAGGTATTCAGACTCCTCCTGCCGTTTCTCCCCTCCTCTCCCGCCCCTTAACACTCTTC
GTTCAAGGACTCTTTCTCTGGTATGTTAGGAACTGTAAACCAGACACTTCTGGGTCTTGC
GTCCCCTCACACTCTTACACTCCACACTCTTACGTCCCCAAGCTTACTCCTTTGCTGTCT
TCTCAACCCTTTGCACATGCTGTTCCCCCCAGTTGGAATGCCTCTCTGTCCACTACCCAT
TTTGAATAACTTGTGTTGCTGGGCTTAGTTCAGTTGTCACCTGTGTCCAGGAAGCCCTTC
CTGATTGCTGCTGGGGTTCTGATTTGGACCCCACAGTCACCTGGGCAGGCCTCTGTCAGC
ATTTGGCCTCCTTACTCTCTCTGCCTCTGCCTGGCGACTCAGGTGCCTGAAGCCAGTACG
AGCTCCCCACAGCGGGCTGGTTTGGGGGACACATCTGTAGTGAATTTTGAGCCTCTGGGA
GCCCTGGGAGTGAGGGTGTGGGCAGTAGCTGACGCCCCCTCACCCCATCCTCCCTGGCAT
TGGCAGGTCTGTGCATAACGAGTTGGAAAAGCGCAGGTGAGTCCCAACCCTGCCCTGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCTCCACTGCCCACTTCATCCTTGTTGCTTGAATCGTCTGGGTCAGGTACCCTCCTCT
GGAGGTATTCAGACTCCTCCTGCCGTTTCTCCCCTCCTCTCCCGCCCCTTAACACTCTTC
GTTCAAGGACTCTTTCTCTGGTATGTTAGGAACTGTAAACCAGACACTTCTGGGTCTTGC
GTCCCCTCACACTCTTACACTCCACACTCTTACGTCCCCAAGCTTACTCCTTTGCTGTCT
TCTCAACCCTTTGCACATGCTGTTCCCCCCAGTTGGAATGCCTCTCTGTCCACTACCCAT
TTTGAATAACTTGTGTTGCTGGGCTTAGTTCAGTTGTCACCTGTGTCCAGGAAGCCCTTC
CTGATTGCTGCTGGGGTTCTGATTTGGACCCCACAGTCACCTGGGCAGGCCTCTGTCAGC
ATTTGGCCTCCTTACTCTCTCTGCCTCTGCCTGGCGACTCAGGTGCCTGAAGCCAGTACG
AGCTCCCCACAGCGGGCTGGTTTGGGGGACACATCTGTAGTGAATTTTGAGCCTCTGGGA
GCCCTGGGAGTGAGGGTGTGGGCAGTAGCTGACGCCCCCTCACCCCATCCTCCCTGGCAT
TGGCAGGTCTGTGCATAACGAGTTGGAAAAGCGCAGGTGAGTCCCAACCCTGCCCTGACA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               83-217, + strand, RNAz p=0.912352
               

               
               295-411, - strand, RNAz p=0.614512
               

               
               484-587, - strand, RNAz p=0.853921

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-217, + strand, RNAz p=0.912352
               

               
               295-411, - strand, RNAz p=0.614512
               

               
               484-587, - strand, RNAz p=0.853921

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               4-658, gnl|bosTau2|chr7 (21509258-21508590)
               

               
               4-658, gnl|Hg17|chr5 (176670925-176670253)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-658, gnl|bosTau2|chr7 (21509258-21508590)
               

               
               4-658, gnl|Hg17|chr5 (176670925-176670253)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	83-217, + strand, RNAz p=0.912352
	295-411, - strand, RNAz p=0.614512
	484-587, - strand, RNAz p=0.853921

	4-658, gnl\|bosTau2\|chr7 (21509258-21508590)
	4-658, gnl\|Hg17\|chr5 (176670925-176670253)