Ss1.1-Pig2-83K21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCATAACTTCTATGCGTGGAGCGCCCCGGGCATCGGCAGGTTCGTGGCCTCCCTGGCCG CCTCGGGGTTTGCCTACCTCACCCTGCTCTTCCTCCTCGAGACCGACCTGCTGTGGAGGC TGAAGTTCTGCCTGTGTGCCTTGCGGAGGAGGCGGGCGCTGACGGAAGCGTACACCCAGA CGCCAGCGCTGCCCGAAGACCAGGACGTGGCGGACGAGAGGAACCGGGTCCTGGCCCCCG GCCTGGACTCACTGCCGGACACGCCCCTGGTCATCAAGGAGCTTTCCAAGGTGTACGAGC AGCGGGCGCCCCTCCTCGCTGTGGATAGGGTCTCCCTCAAGGTCCAGAAAGGGGAGTGCT TCGGCTTGCTGGGCTTCAACGGAGCCGGGAAGACCACGACTTTCAAAATGCTGACCGGGG AGGAGACCGTCAGTTCCGGGGACGCCTTCGTTGGCGGCTACAGCATCCGCTCGGACCTCA GGAGGGTGCGGCAGCAGATTGGCTACTGTCCCCAGTTTGATGCGCTGCTGGACCACCTGA CGGGCCGGGAGACACTGGTCATGTACGCCCGACTGCGGGGCATCCCCGAGCGCCACATCG AGTCCTGTGTGGAAAACACACTGCGGGGGCTGCTCCTGGAGCCGTATGCCAACAAGCGGG TCGGGACGTACAGCGGCGGCAACAAGCGGAAGCTGAGTGCTGGCATTGCCCTGCTGGGAG AGCCCACGGTCATCTTCCTGGACGAGCCGTCCACTGGCATGGACCCCGTGGCCCGGCGCC TGCTCTGGGACACCGTGGCGAGGGCCCGTGAGTCCGGCAAGGCCATCATCATCACCTCCC ACAGCATGGAGGAGTGTGAGGCCCTGTGCACCCGGCTGGCCATCATGGTACAGGGCCAGT TCAAGTGCCTGGGCAGCCCCCAGCACCTCAAGAGCAAGTTTGGCAGCGGCTACTCCCTAC GGGCCAAGATCCGGAGCGAAGGGCAGCAGGAGGCCCTGGAGGAGTTCAAGGCATTCGTGG ATCTGACCTTCCCAGGCAGCGTCCTGGAGGATGAGCACCAAGGAATGGTCCATTACCACC TGCCTGGCGATGACCTGAGCTGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCATAACTTCTATGCGTGGAGCGCCCCGGGCATCGGCAGGTTCGTGGCCTCCCTGGCCG CCTCGGGGTTTGCCTACCTCACCCTGCTCTTCCTCCTCGAGACCGACCTGCTGTGGAGGC TGAAGTTCTGCCTGTGTGCCTTGCGGAGGAGGCGGGCGCTGACGGAAGCGTACACCCAGA CGCCAGCGCTGCCCGAAGACCAGGACGTGGCGGACGAGAGGAACCGGGTCCTGGCCCCCG GCCTGGACTCACTGCCGGACACGCCCCTGGTCATCAAGGAGCTTTCCAAGGTGTACGAGC AGCGGGCGCCCCTCCTCGCTGTGGATAGGGTCTCCCTCAAGGTCCAGAAAGGGGAGTGCT TCGGCTTGCTGGGCTTCAACGGAGCCGGGAAGACCACGACTTTCAAAATGCTGACCGGGG AGGAGACCGTCAGTTCCGGGGACGCCTTCGTTGGCGGCTACAGCATCCGCTCGGACCTCA GGAGGGTGCGGCAGCAGATTGGCTACTGTCCCCAGTTTGATGCGCTGCTGGACCACCTGA CGGGCCGGGAGACACTGGTCATGTACGCCCGACTGCGGGGCATCCCCGAGCGCCACATCG AGTCCTGTGTGGAAAACACACTGCGGGGGCTGCTCCTGGAGCCGTATGCCAACAAGCGGG TCGGGACGTACAGCGGCGGCAACAAGCGGAAGCTGAGTGCTGGCATTGCCCTGCTGGGAG AGCCCACGGTCATCTTCCTGGACGAGCCGTCCACTGGCATGGACCCCGTGGCCCGGCGCC TGCTCTGGGACACCGTGGCGAGGGCCCGTGAGTCCGGCAAGGCCATCATCATCACCTCCC ACAGCATGGAGGAGTGTGAGGCCCTGTGCACCCGGCTGGCCATCATGGTACAGGGCCAGT TCAAGTGCCTGGGCAGCCCCCAGCACCTCAAGAGCAAGTTTGGCAGCGGCTACTCCCTAC GGGCCAAGATCCGGAGCGAAGGGCAGCAGGAGGCCCTGGAGGAGTTCAAGGCATTCGTGG ATCTGACCTTCCCAGGCAGCGTCCTGGAGGATGAGCACCAAGGAATGGTCCATTACCACC TGCCTGGCGATGACCTGAGCTGGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 6-161, gnl|bosTau2|chr25 (4994507-4994662) | |
| 6-161, gnl|canFam2|chr6 (41748981-41748786) | |
| 6-161, gnl|danRer3|chrNA (37995644-37995816) | |
| 6-161, gnl|dasNov1|scaffold_47230 (10896-11096) | |
| 6-161, gnl|echTel1|scaffold_164606 (1137-941) | |
| 6-161, gnl|fr1|chrUn (108192525-108192706) | |
| 6-161, gnl|galGal2|chr14 (1553695-1553503) | |
| 6-161, gnl|hg17|chr16 (2273182-2273376) | |
| 6-161, gnl|Hg17|chr16 (2273343-2273188) | |
| 6-161, gnl|loxAfr1|scaffold_35256 (13576-13775) | |
| 6-161, gnl|mm7|chr17 (22583270-22583074) | |
| 6-161, gnl|Mm7|chr17 (22583107-22583262) | |
| 6-161, gnl|monDom2|scaffold_5 (120629246-120629052) | |
| 6-161, gnl|panTro1|chr18 (2084452-2084646) | |
| 6-161, gnl|rheMac2|chr20 (2283283-2283477) | |
| 6-161, gnl|rn3|chr10 (13657874-13657678) | |
| 6-161, gnl|tetNig1|chr3 (9902153-9901971) | |
| 6-161, gnl|xenTro1|scaffold_12 (3676871-3676677) | |
| 289-488, gnl|bosTau2|chr25 (4995425-4995624) | |
| 289-488, gnl|canFam2|chr6 (41749949-41749767) | |
| 289-488, gnl|danRer3|chrNA (37988088-37988268) | |
| 289-488, gnl|dasNov1|scaffold_135381 (6399-6231) | |
| 289-488, gnl|echTel1|scaffold_195042 (1627-1445) | |
| 289-488, gnl|fr1|chrUn (108191820-108192001) | |
| 289-488, gnl|galGal2|chr14 (1554349-1554164) | |
| 289-488, gnl|hg17|chr16 (2271020-2271202) | |
| 289-488, gnl|Hg17|chr16 (2271225-2271026) | |
| 289-488, gnl|loxAfr1|scaffold_35256 (12384-12569) | |
| 289-488, gnl|mm7|chr17 (22586275-22586093) | |
| 289-488, gnl|Mm7|chr17 (22586068-22586267) | |
| 289-488, gnl|monDom2|scaffold_5 (120643659-120643476) | |
| 289-488, gnl|oryCun1|scaffold_98654 (11523-11705) | |
| 289-488, gnl|panTro1|chr18 (2082509-2082691) | |
| 289-488, gnl|rheMac2|chr20 (2281398-2281580) | |
| 289-488, gnl|rn3|chr10 (13660098-13659916) | |
| 289-488, gnl|tetNig1|chr3 (9902705-9902525) | |
| 289-488, gnl|xenTro1|scaffold_12 (3678051-3677870) | |
| 842-1049, gnl|bosTau2|chr25 (4998352-4998558) | |
| 842-1049, gnl|Hg17|chr16 (2268074-2267861) | |
| 842-1049, gnl|Mm7|chr17 (22589359-22589559) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-161, gnl|bosTau2|chr25 (4994507-4994662) | |
| 6-161, gnl|canFam2|chr6 (41748981-41748786) | |
| 6-161, gnl|danRer3|chrNA (37995644-37995816) | |
| 6-161, gnl|dasNov1|scaffold_47230 (10896-11096) | |
| 6-161, gnl|echTel1|scaffold_164606 (1137-941) | |
| 6-161, gnl|fr1|chrUn (108192525-108192706) | |
| 6-161, gnl|galGal2|chr14 (1553695-1553503) | |
| 6-161, gnl|hg17|chr16 (2273182-2273376) | |
| 6-161, gnl|Hg17|chr16 (2273343-2273188) | |
| 6-161, gnl|loxAfr1|scaffold_35256 (13576-13775) | |
| 6-161, gnl|mm7|chr17 (22583270-22583074) | |
| 6-161, gnl|Mm7|chr17 (22583107-22583262) | |
| 6-161, gnl|monDom2|scaffold_5 (120629246-120629052) | |
| 6-161, gnl|panTro1|chr18 (2084452-2084646) | |
| 6-161, gnl|rheMac2|chr20 (2283283-2283477) | |
| 6-161, gnl|rn3|chr10 (13657874-13657678) | |
| 6-161, gnl|tetNig1|chr3 (9902153-9901971) | |
| 6-161, gnl|xenTro1|scaffold_12 (3676871-3676677) | |
| 289-488, gnl|bosTau2|chr25 (4995425-4995624) | |
| 289-488, gnl|canFam2|chr6 (41749949-41749767) | |
| 289-488, gnl|danRer3|chrNA (37988088-37988268) | |
| 289-488, gnl|dasNov1|scaffold_135381 (6399-6231) | |
| 289-488, gnl|echTel1|scaffold_195042 (1627-1445) | |
| 289-488, gnl|fr1|chrUn (108191820-108192001) | |
| 289-488, gnl|galGal2|chr14 (1554349-1554164) | |
| 289-488, gnl|hg17|chr16 (2271020-2271202) | |
| 289-488, gnl|Hg17|chr16 (2271225-2271026) | |
| 289-488, gnl|loxAfr1|scaffold_35256 (12384-12569) | |
| 289-488, gnl|mm7|chr17 (22586275-22586093) | |
| 289-488, gnl|Mm7|chr17 (22586068-22586267) | |
| 289-488, gnl|monDom2|scaffold_5 (120643659-120643476) | |
| 289-488, gnl|oryCun1|scaffold_98654 (11523-11705) | |
| 289-488, gnl|panTro1|chr18 (2082509-2082691) | |
| 289-488, gnl|rheMac2|chr20 (2281398-2281580) | |
| 289-488, gnl|rn3|chr10 (13660098-13659916) | |
| 289-488, gnl|tetNig1|chr3 (9902705-9902525) | |
| 289-488, gnl|xenTro1|scaffold_12 (3678051-3677870) | |
| 842-1049, gnl|bosTau2|chr25 (4998352-4998558) | |
| 842-1049, gnl|Hg17|chr16 (2268074-2267861) | |
| 842-1049, gnl|Mm7|chr17 (22589359-22589559) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| eru (0.120048) |