Non-Coding RNA Search

Ss1.1-Pig2-84H03.5

Sequence:


               
               CATCTATCTCAAGGCCTTGTCCACGGACTCAGTGGAGCGCCTGCCCGTCTACAACAAGTC
AGCCTGGCGCCACTACCAGACCATCCAGGAGGCCGGCGACTGGTGTGTGCCCAGCACGGA
GCCCAAGAACACGTCCACGTACCGTGTCAGCTAAGGGGCCACCCCGCTCATCCGCACCCA
AGAAGAGGGACTGCTGTCTCTGGGTCCGGCCACCACGGTGACCCTCCCCATCTCCCCGCC
AGATGAGGGGGAGGCTCCCCTGATGACCAGCTTCTGTCTCTATGGAAATCACTGCAGTGA
CCAGTCTGTGGTGGCCCCAAAGTGCCAATCTCTGTCTCCATGGAGACCCTTAGGTAGTCT
CCCTGGGTCCAAGCTCTGTGGGCAATGCCTGAGGATCGGGGGATGTCTCCACCCTGATGG
AATATCCCAGAAATAAGTTTCCATGGCAGTCCTCCTCTCTGAGCCCAGAGCTGCCACTTT
CTCTGCCAAGGGTCCTAGGACCCCCTCACTGCCACTCACAGCCCTGGCTTTCCAAGTAGA
CACCCCCTGCTCGCCTTATTCCTCCGGCCTGTGCCAGTACCCTGGGCCTGGTCTGGTGTC
CGTGTTAGGAGGGGGCCAGGTGTCCGCCAGATGTGGGGTAGTGGGAGGGGACCCCCCTGG
TCAGGGACCTAGTCCTGCAGTCTGGCCTTCCACTCTTGAGTTTAAGGTCAAAGTTAAAAG
GGAGGGGCTTCTCACCTGGGGCTTACTCCCAAAGCCCAGGAACCCCGGGAGGCCCCAGCT
CTTCCCTGCATGTCCTCACATGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCTATCTCAAGGCCTTGTCCACGGACTCAGTGGAGCGCCTGCCCGTCTACAACAAGTC
AGCCTGGCGCCACTACCAGACCATCCAGGAGGCCGGCGACTGGTGTGTGCCCAGCACGGA
GCCCAAGAACACGTCCACGTACCGTGTCAGCTAAGGGGCCACCCCGCTCATCCGCACCCA
AGAAGAGGGACTGCTGTCTCTGGGTCCGGCCACCACGGTGACCCTCCCCATCTCCCCGCC
AGATGAGGGGGAGGCTCCCCTGATGACCAGCTTCTGTCTCTATGGAAATCACTGCAGTGA
CCAGTCTGTGGTGGCCCCAAAGTGCCAATCTCTGTCTCCATGGAGACCCTTAGGTAGTCT
CCCTGGGTCCAAGCTCTGTGGGCAATGCCTGAGGATCGGGGGATGTCTCCACCCTGATGG
AATATCCCAGAAATAAGTTTCCATGGCAGTCCTCCTCTCTGAGCCCAGAGCTGCCACTTT
CTCTGCCAAGGGTCCTAGGACCCCCTCACTGCCACTCACAGCCCTGGCTTTCCAAGTAGA
CACCCCCTGCTCGCCTTATTCCTCCGGCCTGTGCCAGTACCCTGGGCCTGGTCTGGTGTC
CGTGTTAGGAGGGGGCCAGGTGTCCGCCAGATGTGGGGTAGTGGGAGGGGACCCCCCTGG
TCAGGGACCTAGTCCTGCAGTCTGGCCTTCCACTCTTGAGTTTAAGGTCAAAGTTAAAAG
GGAGGGGCTTCTCACCTGGGGCTTACTCCCAAAGCCCAGGAACCCCGGGAGGCCCCAGCT
CTTCCCTGCATGTCCTCACATGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               322-560, - strand, RNAz p=0.999688

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               322-560, - strand, RNAz p=0.999688

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               346-560, DB808348 full-length enriched swine cDNA library, adult liver Sus 
(dbj|DB808348.1|), blast E-value=0, identity=99.53% 
               

               
               322-537, 1395457 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN546315.1|), 
blast E-value=1.4013e-45, identity=86.57% 
               

               
               322-537, LB01623.CR_E19 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|DT814077.1|), 
blast E-value=1.4013e-45, identity=86.57% 
               

               
               322-537, LB00540.CR_H02 GC_BGC-05 Bos taurus cDNA clone IMAGE (gb|DT859259.1|), 
blast E-value=1.4013e-45, identity=86.57% 
               

               
               322-537, LB02511.CR_C03 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV870417.1|), 
blast E-value=1.4013e-45, identity=86.57% 
               

               
               322-510, POSM0605009_B24R porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|DV898534.1|), blast E-value=0, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               346-560, DB808348 full-length enriched swine cDNA library, adult liver Sus 
(dbj|DB808348.1|), blast E-value=0, identity=99.53% 
               

               
               322-537, 1395457 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN546315.1|), 
blast E-value=1.4013e-45, identity=86.57% 
               

               
               322-537, LB01623.CR_E19 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|DT814077.1|), 
blast E-value=1.4013e-45, identity=86.57% 
               

               
               322-537, LB00540.CR_H02 GC_BGC-05 Bos taurus cDNA clone IMAGE (gb|DT859259.1|), 
blast E-value=1.4013e-45, identity=86.57% 
               

               
               322-537, LB02511.CR_C03 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV870417.1|), 
blast E-value=1.4013e-45, identity=86.57% 
               

               
               322-510, POSM0605009_B24R porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|DV898534.1|), blast E-value=0, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               12-778, gnl|bosTau2|chr19 (29260063-29259308)
               

               
               12-778, gnl|Hg17|chr17 (45542318-45543076)
               

               
               12-778, gnl|Mm7|chr11 (95136363-95135622)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-778, gnl|bosTau2|chr19 (29260063-29259308)
               

               
               12-778, gnl|Hg17|chr17 (45542318-45543076)
               

               
               12-778, gnl|Mm7|chr11 (95136363-95135622)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ill (0.175593)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)

	346-560, DB808348 full-length enriched swine cDNA library, adult liver Sus (dbj\|DB808348.1\|), blast E-value=0, identity=99.53%
	322-537, 1395457 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN546315.1\|), blast E-value=1.4013e-45, identity=86.57%
	322-537, LB01623.CR_E19 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb\|DT814077.1\|), blast E-value=1.4013e-45, identity=86.57%
	322-537, LB00540.CR_H02 GC_BGC-05 Bos taurus cDNA clone IMAGE (gb\|DT859259.1\|), blast E-value=1.4013e-45, identity=86.57%
	322-537, LB02511.CR_C03 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb\|DV870417.1\|), blast E-value=1.4013e-45, identity=86.57%
	322-510, POSM0605009_B24R porcine skeletal muscle cDNA library (PoSM) Sus (gb\|DV898534.1\|), blast E-value=0, identity=100%

	12-778, gnl\|bosTau2\|chr19 (29260063-29259308)
	12-778, gnl\|Hg17\|chr17 (45542318-45543076)
	12-778, gnl\|Mm7\|chr11 (95136363-95135622)