Ss1.1-Pig2-85A17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAACCTACAGGCACTGGGAACTTGCAAGCAGCCAGGGACCGCTGAAAATAACACTTCTT TTTCTTTCTTTGTGTTCAAAACTATTTTCTTTCTTCACCAGATTTTGTTGTCCTCCCCCC TCTGCAGTTGTTTCCCATTAGTAACTCGATCTCTCAGCGCAGTAAGAGTCGCCTTCTTCG CCTCCTTTCCCCTCCGCTCGTGTTTGTTTGTTTTCTGCACATCTCCTTCAGGAAGCCGCT GGGGCTTTCTCCCTTCTTCTTTTCTCTTTTCCGAGCAGACCCGTTTCCACTCCGTCTGCC TCTTTCTTCTTCCCTCTTCGCCCTCTGTCCCCGAGCGTCTGTCTCCGCAACTCCCCCCCA TCGCGCAGCCTCTGCGGTCCCTTCTCCTTCCCTCGGATGTGCTGAGAACCCCGGGCGTGT GTATATGGAAATAGTGGGGTGCCGAGCAGAAGACAACTCGTGTCCTTTCCGCCCCCCAGC CATGCTCTTCCACGGGATCTCCGGAGGCCACATCCAAGGCATCATGGAGGAGATGGAGCG CAGATCCAAGACCGAGGCCCGCCTGGCCAAAGGCGCCCAACTCAACGGCCGCGATGCGGG CATGCCCCCGCTGAGCCCAGAGAAGCCCGCTCTGTGCGCCGGCTGCGGGGGCAAGATCGC CGACAGGTACTACCTGCTGGCCGTGGACAAACAGTGGCACCTGAGGTGCCTGAAGTGCTG TGAATGTAAGCTGGCCCTCGAGTCCGAGCTCACCTGCTTCGCCAAGGACGGTAGCATTTA CTGCAAGGAGGATTACTACAGAAGGTTCTCTGTGCAGAGATGTGCCCGCTGCCACCTTGG CATCTCTGCCTCCGAGATGGTCATGCGCGCCCGAGACTCTGTCTACCACCTGAGCTGTTT CACCTGCTCCACCTGCAACAAGACCCTGACCACGGGCGACCATTTTGGCATGAAGGACAG CCTGGTGTACTGTCGCGCCCACTTCGAGACCCTTTTGCAAGGAGAGTATCCTCCGCAGCT GAGCTACACGGAGCTGGCGGCCAAGAGCGGCGGCTTGGCCCTGCCTTACTTCAATGGCAC AGGAACGGTGCAGAAGGGGCGGCCCCGGAAGCGGAAGAGCCCCGCGCTGGGAGTGGACAT CGTCAATTACAACTCAGGTTGTAACGAGAATGAGGCCGACCACCTGGACCGGGATCAGCA GCCATACCCCCCCTCGCAGAAGACCAAGCGCATGCGCACTTCCTTCAAGCACCATCAGCT CCGGACCATGAAATCCTACTTCGCCATCAACCACAACCCGGACGCCAAGGACCTCAAGCA GCTTGCTCAGAAAACAGGCCTGACCAAAAGAGTTTTGCAGGGAGAACAAATCTTGGGGCA TTACAGCCAAACATCCCGACGTTTGAAAATTCCCTAAAGTATTAAAAGAAGGGGAAAAGT TTGATCGGAAATCCACTGCAGTGAAGACAAAGACAATATTAGGTTATGATAATCATACAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAACCTACAGGCACTGGGAACTTGCAAGCAGCCAGGGACCGCTGAAAATAACACTTCTT TTTCTTTCTTTGTGTTCAAAACTATTTTCTTTCTTCACCAGATTTTGTTGTCCTCCCCCC TCTGCAGTTGTTTCCCATTAGTAACTCGATCTCTCAGCGCAGTAAGAGTCGCCTTCTTCG CCTCCTTTCCCCTCCGCTCGTGTTTGTTTGTTTTCTGCACATCTCCTTCAGGAAGCCGCT GGGGCTTTCTCCCTTCTTCTTTTCTCTTTTCCGAGCAGACCCGTTTCCACTCCGTCTGCC TCTTTCTTCTTCCCTCTTCGCCCTCTGTCCCCGAGCGTCTGTCTCCGCAACTCCCCCCCA TCGCGCAGCCTCTGCGGTCCCTTCTCCTTCCCTCGGATGTGCTGAGAACCCCGGGCGTGT GTATATGGAAATAGTGGGGTGCCGAGCAGAAGACAACTCGTGTCCTTTCCGCCCCCCAGC CATGCTCTTCCACGGGATCTCCGGAGGCCACATCCAAGGCATCATGGAGGAGATGGAGCG CAGATCCAAGACCGAGGCCCGCCTGGCCAAAGGCGCCCAACTCAACGGCCGCGATGCGGG CATGCCCCCGCTGAGCCCAGAGAAGCCCGCTCTGTGCGCCGGCTGCGGGGGCAAGATCGC CGACAGGTACTACCTGCTGGCCGTGGACAAACAGTGGCACCTGAGGTGCCTGAAGTGCTG TGAATGTAAGCTGGCCCTCGAGTCCGAGCTCACCTGCTTCGCCAAGGACGGTAGCATTTA CTGCAAGGAGGATTACTACAGAAGGTTCTCTGTGCAGAGATGTGCCCGCTGCCACCTTGG CATCTCTGCCTCCGAGATGGTCATGCGCGCCCGAGACTCTGTCTACCACCTGAGCTGTTT CACCTGCTCCACCTGCAACAAGACCCTGACCACGGGCGACCATTTTGGCATGAAGGACAG CCTGGTGTACTGTCGCGCCCACTTCGAGACCCTTTTGCAAGGAGAGTATCCTCCGCAGCT GAGCTACACGGAGCTGGCGGCCAAGAGCGGCGGCTTGGCCCTGCCTTACTTCAATGGCAC AGGAACGGTGCAGAAGGGGCGGCCCCGGAAGCGGAAGAGCCCCGCGCTGGGAGTGGACAT CGTCAATTACAACTCAGGTTGTAACGAGAATGAGGCCGACCACCTGGACCGGGATCAGCA GCCATACCCCCCCTCGCAGAAGACCAAGCGCATGCGCACTTCCTTCAAGCACCATCAGCT CCGGACCATGAAATCCTACTTCGCCATCAACCACAACCCGGACGCCAAGGACCTCAAGCA GCTTGCTCAGAAAACAGGCCTGACCAAAAGAGTTTTGCAGGGAGAACAAATCTTGGGGCA TTACAGCCAAACATCCCGACGTTTGAAAATTCCCTAAAGTATTAAAAGAAGGGGAAAAGT TTGATCGGAAATCCACTGCAGTGAAGACAAAGACAATATTAGGTTATGATAATCATACAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-599, gnl|bosTau2|chr16 (56950583-56951180) | |
| 1-599, gnl|Hg17|chr1 (194618169-194618785) | |
| 1-599, gnl|Mm7|chr1 (138722527-138721900) | |
| 796-1054, gnl|bosTau2|chr11 (76728722-76728982) | |
| 796-1054, gnl|canFam2|chr9 (62184017-62183587) | |
| 796-1054, gnl|danRer3|chrUn (182127259-182126865) | |
| 796-1054, gnl|dasNov1|scaffold_2234 (22700-22272) | |
| 796-1054, gnl|echTel1|scaffold_244122 (1149-713) | |
| 796-1054, gnl|fr1|chrUn (280972241-280972633) | |
| 796-1054, gnl|galGal2|chr17 (1204611-1204215) | |
| 796-1054, gnl|hg17|chr9 (123856947-123857377) | |
| 796-1054, gnl|Hg17|chr9 (123856949-123857209) | |
| 796-1054, gnl|loxAfr1|scaffold_36389 (12872-12502) | |
| 796-1054, gnl|mm7|chr2 (38361752-38362172) | |
| 796-1054, gnl|Mm7|chr2 (38361754-38362014) | |
| 796-1054, gnl|monDom2|scaffold_38 (17885977-17886400) | |
| 796-1054, gnl|oryCun1|scaffold_184010 (67264-67706) | |
| 796-1054, gnl|panTro1|chr11 (108594161-108594591) | |
| 796-1054, gnl|rheMac2|chr15 (11742596-11742166) | |
| 796-1054, gnl|rn3|chr3 (18028547-18028967) | |
| 796-1054, gnl|tetNig1|chrUn_random (19928760-19928363) | |
| 796-1054, gnl|xenTro1|scaffold_448 (721051-720653) | |
| 1160-1361, gnl|bosTau2|chr11 (76734776-76734974) | |
| 1160-1361, gnl|canFam2|chr9 (62178083-62177871) | |
| 1160-1361, gnl|danRer3|chrUn (182124005-182123793) | |
| 1160-1361, gnl|dasNov1|scaffold_19314 (48876-49085) | |
| 1160-1361, gnl|echTel1|scaffold_223448 (9653-9441) | |
| 1160-1361, gnl|fr1|chrUn (280974027-280974236) | |
| 1160-1361, gnl|galGal2|chr17 (1196288-1196076) | |
| 1160-1361, gnl|hg17|chr9 (123862931-123863143) | |
| 1160-1361, gnl|Hg17|chr9 (123862940-123863138) | |
| 1160-1361, gnl|loxAfr1|scaffold_80653 (8291-8079) | |
| 1160-1361, gnl|mm7|chr2 (38367208-38367420) | |
| 1160-1361, gnl|Mm7|chr2 (38367217-38367415) | |
| 1160-1361, gnl|monDom2|scaffold_38 (17896737-17896946) | |
| 1160-1361, gnl|oryCun1|scaffold_184010 (72886-73098) | |
| 1160-1361, gnl|panTro1|chr11 (108600244-108600456) | |
| 1160-1361, gnl|rheMac2|chr15 (11736644-11736432) | |
| 1160-1361, gnl|rn3|chr3 (18033990-18034202) | |
| 1160-1361, gnl|tetNig1|chrUn_random (19926743-19926534) | |
| 1160-1361, gnl|xenTro1|scaffold_448 (696879-696667) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-599, gnl|bosTau2|chr16 (56950583-56951180) | |
| 1-599, gnl|Hg17|chr1 (194618169-194618785) | |
| 1-599, gnl|Mm7|chr1 (138722527-138721900) | |
| 796-1054, gnl|bosTau2|chr11 (76728722-76728982) | |
| 796-1054, gnl|canFam2|chr9 (62184017-62183587) | |
| 796-1054, gnl|danRer3|chrUn (182127259-182126865) | |
| 796-1054, gnl|dasNov1|scaffold_2234 (22700-22272) | |
| 796-1054, gnl|echTel1|scaffold_244122 (1149-713) | |
| 796-1054, gnl|fr1|chrUn (280972241-280972633) | |
| 796-1054, gnl|galGal2|chr17 (1204611-1204215) | |
| 796-1054, gnl|hg17|chr9 (123856947-123857377) | |
| 796-1054, gnl|Hg17|chr9 (123856949-123857209) | |
| 796-1054, gnl|loxAfr1|scaffold_36389 (12872-12502) | |
| 796-1054, gnl|mm7|chr2 (38361752-38362172) | |
| 796-1054, gnl|Mm7|chr2 (38361754-38362014) | |
| 796-1054, gnl|monDom2|scaffold_38 (17885977-17886400) | |
| 796-1054, gnl|oryCun1|scaffold_184010 (67264-67706) | |
| 796-1054, gnl|panTro1|chr11 (108594161-108594591) | |
| 796-1054, gnl|rheMac2|chr15 (11742596-11742166) | |
| 796-1054, gnl|rn3|chr3 (18028547-18028967) | |
| 796-1054, gnl|tetNig1|chrUn_random (19928760-19928363) | |
| 796-1054, gnl|xenTro1|scaffold_448 (721051-720653) | |
| 1160-1361, gnl|bosTau2|chr11 (76734776-76734974) | |
| 1160-1361, gnl|canFam2|chr9 (62178083-62177871) | |
| 1160-1361, gnl|danRer3|chrUn (182124005-182123793) | |
| 1160-1361, gnl|dasNov1|scaffold_19314 (48876-49085) | |
| 1160-1361, gnl|echTel1|scaffold_223448 (9653-9441) | |
| 1160-1361, gnl|fr1|chrUn (280974027-280974236) | |
| 1160-1361, gnl|galGal2|chr17 (1196288-1196076) | |
| 1160-1361, gnl|hg17|chr9 (123862931-123863143) | |
| 1160-1361, gnl|Hg17|chr9 (123862940-123863138) | |
| 1160-1361, gnl|loxAfr1|scaffold_80653 (8291-8079) | |
| 1160-1361, gnl|mm7|chr2 (38367208-38367420) | |
| 1160-1361, gnl|Mm7|chr2 (38367217-38367415) | |
| 1160-1361, gnl|monDom2|scaffold_38 (17896737-17896946) | |
| 1160-1361, gnl|oryCun1|scaffold_184010 (72886-73098) | |
| 1160-1361, gnl|panTro1|chr11 (108600244-108600456) | |
| 1160-1361, gnl|rheMac2|chr15 (11736644-11736432) | |
| 1160-1361, gnl|rn3|chr3 (18033990-18034202) | |
| 1160-1361, gnl|tetNig1|chrUn_random (19926743-19926534) | |
| 1160-1361, gnl|xenTro1|scaffold_448 (696879-696667) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.45861) |