Non-Coding RNA Search

Ss1.1-Pig2-85A20.5

Sequence:


               
               CCTGCCCACCAGCAGCCTCCCTCACAGCTGTTACACCACCACCTCCTGCAGGATGCTCAG
AGTGGCTCCGGCCAGCGCAGCCAGCCCAGCTCCCTGCAGCCCAAGTCGCAAGCCTCCAAA
CCTGCTTACGGCAACTCTCCGTACTGGACAAACTGAACCCTGAAGAGTGGGGTGGGCTGG
GTGGGTCTTACCCTGGGCAGGAGAGATCACACGGAGCCGGAGCCCCTTCCCAGAGCTCCT
GAGACGTGTAACTGTGTCGGCCGAGCCTCTGTGGGGAGCCTGCCCCCAGACTCGCTCTTG
TATGTAATGTATTTATGTATGTATTTGTAAATGTGAGAAACGTCTTGGGGGATTGTGGGG
TGCAGCTGCTCCTCGCGGCCGGACTGCTTCCCTCACTCAAGCTCCTTCTTGCTGTAGCAG
AATCACCCCCTCCCCACCTTCTGCCTTCAGGGCTTTCACACAGCCCCCTGGTGGGCAGTG
TCTGGTTTGAGGCGGGTTGGGAGTTGGGGTCAGGTACCAATGAAGAATCACAACTTATCT
CCCTCCCCTGTAAACCATTATTTGCGTTTTCTTCCTTGTGTAATTACTTTATCCATCTCT
TTTTGAGAACCTGGACCTTTTGTCATTTGTCATGTCCCCCTTCCACCAAATCTTGATCTG
GGAATAGCAGAGATACATCCCCCAGCCCAGGAAGTGGCACCTGTTTGTCTTCATATAGAA
CAGGAACTTTTGCTTCTGGTCTGGTCTTATCCCCAGAGACTTGCCTTCGTCTGGCTGACC
GTTTTAAAAATAATCTGAATTTGCGCTCAGAGGTATTCAGCCATTCAGCTCCCCTTCTAA
AAAATCAAAGATTTGCTTTCATCTCAGTGAGGGCCCGTCTCCTCGATTCTGGTCGTCCTG
AACAAGGCGGACGACTGTTTGAGAGGTTTTCTCTTTTGCCCAAACTCCACCTAATAAAGT
TCTGAGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGCCCACCAGCAGCCTCCCTCACAGCTGTTACACCACCACCTCCTGCAGGATGCTCAG
AGTGGCTCCGGCCAGCGCAGCCAGCCCAGCTCCCTGCAGCCCAAGTCGCAAGCCTCCAAA
CCTGCTTACGGCAACTCTCCGTACTGGACAAACTGAACCCTGAAGAGTGGGGTGGGCTGG
GTGGGTCTTACCCTGGGCAGGAGAGATCACACGGAGCCGGAGCCCCTTCCCAGAGCTCCT
GAGACGTGTAACTGTGTCGGCCGAGCCTCTGTGGGGAGCCTGCCCCCAGACTCGCTCTTG
TATGTAATGTATTTATGTATGTATTTGTAAATGTGAGAAACGTCTTGGGGGATTGTGGGG
TGCAGCTGCTCCTCGCGGCCGGACTGCTTCCCTCACTCAAGCTCCTTCTTGCTGTAGCAG
AATCACCCCCTCCCCACCTTCTGCCTTCAGGGCTTTCACACAGCCCCCTGGTGGGCAGTG
TCTGGTTTGAGGCGGGTTGGGAGTTGGGGTCAGGTACCAATGAAGAATCACAACTTATCT
CCCTCCCCTGTAAACCATTATTTGCGTTTTCTTCCTTGTGTAATTACTTTATCCATCTCT
TTTTGAGAACCTGGACCTTTTGTCATTTGTCATGTCCCCCTTCCACCAAATCTTGATCTG
GGAATAGCAGAGATACATCCCCCAGCCCAGGAAGTGGCACCTGTTTGTCTTCATATAGAA
CAGGAACTTTTGCTTCTGGTCTGGTCTTATCCCCAGAGACTTGCCTTCGTCTGGCTGACC
GTTTTAAAAATAATCTGAATTTGCGCTCAGAGGTATTCAGCCATTCAGCTCCCCTTCTAA
AAAATCAAAGATTTGCTTTCATCTCAGTGAGGGCCCGTCTCCTCGATTCTGGTCGTCCTG
AACAAGGCGGACGACTGTTTGAGAGGTTTTCTCTTTTGCCCAAACTCCACCTAATAAAGT
TCTGAGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-352, gnl|bosTau2|chr25 (27890006-27889653)
               

               
               1-352, gnl|Hg17|chr9 (33912744-33912306)
               

               
               1-352, gnl|Mm7|chr4 (41333856-41333406)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-352, gnl|bosTau2|chr25 (27890006-27889653)
               

               
               1-352, gnl|Hg17|chr9 (33912744-33912306)
               

               
               1-352, gnl|Mm7|chr4 (41333856-41333406)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               cag (0.302389)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               ese (0.126502)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.302389)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               ese (0.126502)

	1-352, gnl\|bosTau2\|chr25 (27890006-27889653)
	1-352, gnl\|Hg17\|chr9 (33912744-33912306)
	1-352, gnl\|Mm7\|chr4 (41333856-41333406)

	cag (0.302389)
	nep (0.183925)
	gul (0.177588)
	ton (0.1755)
	nje (0.16592)
	csp (0.161186)
	cli (0.152812)
	lnt (0.142308)
	hlv (0.139256)
	ssp (0.13552)
	ute (0.132784)
	ese (0.126502)