Ss1.1-Pig2-86D19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTTTTCCCCAAGTCGGACCCCAAAGCTCTTGACCTGCTGGACCGGATGTTGACCTTTA ACCCCAACAAACGGATCACAGTGGAGGAAGCACTGGCTCATCCTTACCTGGAGCAGTACT ACGACCCAACAGATGAGCCAGTGGCCGAGGAGCCTTTCACCTTCGACATGGAGCTGGATG ATCTACCCAAGGAGCGGCTGAAGGAACTCATCTTCCAGGAAACAGCCCGCTTCCAGCCCG GAGGGCTGGAGGCCCCCTAACCTGGACAGATGCCTCTGCTCTCTGGGGCCTGGCCCTGCC TCCTGCCTGCCCCTCCCCTGCCGGACTGTTAGAAAATGGACCCAGAGCCCAGCCCAGATC ACCCCCCCAGGCGACAGCCAGCCCAGGTTCGGGGCGGGGGCAGAGGGTGGGCCTGGCCAC CTCCCCTTGCTTAGCTCAGGCGTCCTGCTTCAGGCAGGCTGATGCACCCTCCCCGCCTCC CAGGACCTGAGGGGCTCAGGTGGCCCCAAAGCAAATTTCCCCCTGCTGCTGCTCAGCCTC CGCCTGCCCCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTTTTCCCCAAGTCGGACCCCAAAGCTCTTGACCTGCTGGACCGGATGTTGACCTTTA ACCCCAACAAACGGATCACAGTGGAGGAAGCACTGGCTCATCCTTACCTGGAGCAGTACT ACGACCCAACAGATGAGCCAGTGGCCGAGGAGCCTTTCACCTTCGACATGGAGCTGGATG ATCTACCCAAGGAGCGGCTGAAGGAACTCATCTTCCAGGAAACAGCCCGCTTCCAGCCCG GAGGGCTGGAGGCCCCCTAACCTGGACAGATGCCTCTGCTCTCTGGGGCCTGGCCCTGCC TCCTGCCTGCCCCTCCCCTGCCGGACTGTTAGAAAATGGACCCAGAGCCCAGCCCAGATC ACCCCCCCAGGCGACAGCCAGCCCAGGTTCGGGGCGGGGGCAGAGGGTGGGCCTGGCCAC CTCCCCTTGCTTAGCTCAGGCGTCCTGCTTCAGGCAGGCTGATGCACCCTCCCCGCCTCC CAGGACCTGAGGGGCTCAGGTGGCCCCAAAGCAAATTTCCCCCTGCTGCTGCTCAGCCTC CGCCTGCCCCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 354-473, + strand, RNAz p=0.597164 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 354-473, + strand, RNAz p=0.597164 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_002746, + |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 26-137, gnl|bosTau2|chr17 (45533705-45533594) | |
| 26-137, gnl|canFam2|chr26 (34089299-34089422) | |
| 26-137, gnl|danRer3|chr5 (3558922-3558805) | |
| 26-137, gnl|dasNov1|scaffold_48310 (3538-3662) | |
| 26-137, gnl|echTel1|scaffold_279930 (18725-18602) | |
| 26-137, gnl|fr1|chrUn (129151377-129151497) | |
| 26-137, gnl|galGal2|chr15 (510958-510836) | |
| 26-137, gnl|hg17|chr22 (20451707-20451831) | |
| 26-137, gnl|Hg17|chr22 (20451827-20451716) | |
| 26-137, gnl|loxAfr1|scaffold_11360 (14950-15073) | |
| 26-137, gnl|mm7|chr16 (16585295-16585171) | |
| 26-137, gnl|Mm7|chr16 (16585173-16585284) | |
| 26-137, gnl|monDom2|scaffold_214 (792150-792026) | |
| 26-137, gnl|oryCun1|scaffold_169844 (13691-13568) | |
| 26-137, gnl|panTro1|chr23 (20479706-20479830) | |
| 26-137, gnl|rheMac2|chr10 (65529074-65529198) | |
| 26-137, gnl|rn3|chr11 (86016747-86016871) | |
| 26-137, gnl|tetNig1|chr12 (3777126-3777246) | |
| 26-137, gnl|xenTro1|scaffold_118 (227547-227429) | |
| 292-473, gnl|bosTau2|chr25 (25133765-25133928) | |
| 292-473, gnl|canFam2|chr6 (21121909-21122229) | |
| 292-473, gnl|dasNov1|scaffold_44721 (5799-5481) | |
| 292-473, gnl|echTel1|scaffold_159200 (2869-3174) | |
| 292-473, gnl|hg17|chr16 (30033229-30033549) | |
| 292-473, gnl|Hg17|chr16 (30033531-30033381) | |
| 292-473, gnl|loxAfr1|scaffold_1209 (74540-74215) | |
| 292-473, gnl|mm7|chr7 (122862097-122861781) | |
| 292-473, gnl|Mm7|chr7 (122861797-122861939) | |
| 292-473, gnl|monDom2|scaffold_5 (119642615-119642214) | |
| 292-473, gnl|panTro1|chr18 (30796146-30796466) | |
| 292-473, gnl|rheMac2|chr20 (28098655-28098972) | |
| 292-473, gnl|rn3|chr1 (186090845-186090529) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 26-137, gnl|bosTau2|chr17 (45533705-45533594) | |
| 26-137, gnl|canFam2|chr26 (34089299-34089422) | |
| 26-137, gnl|danRer3|chr5 (3558922-3558805) | |
| 26-137, gnl|dasNov1|scaffold_48310 (3538-3662) | |
| 26-137, gnl|echTel1|scaffold_279930 (18725-18602) | |
| 26-137, gnl|fr1|chrUn (129151377-129151497) | |
| 26-137, gnl|galGal2|chr15 (510958-510836) | |
| 26-137, gnl|hg17|chr22 (20451707-20451831) | |
| 26-137, gnl|Hg17|chr22 (20451827-20451716) | |
| 26-137, gnl|loxAfr1|scaffold_11360 (14950-15073) | |
| 26-137, gnl|mm7|chr16 (16585295-16585171) | |
| 26-137, gnl|Mm7|chr16 (16585173-16585284) | |
| 26-137, gnl|monDom2|scaffold_214 (792150-792026) | |
| 26-137, gnl|oryCun1|scaffold_169844 (13691-13568) | |
| 26-137, gnl|panTro1|chr23 (20479706-20479830) | |
| 26-137, gnl|rheMac2|chr10 (65529074-65529198) | |
| 26-137, gnl|rn3|chr11 (86016747-86016871) | |
| 26-137, gnl|tetNig1|chr12 (3777126-3777246) | |
| 26-137, gnl|xenTro1|scaffold_118 (227547-227429) | |
| 292-473, gnl|bosTau2|chr25 (25133765-25133928) | |
| 292-473, gnl|canFam2|chr6 (21121909-21122229) | |
| 292-473, gnl|dasNov1|scaffold_44721 (5799-5481) | |
| 292-473, gnl|echTel1|scaffold_159200 (2869-3174) | |
| 292-473, gnl|hg17|chr16 (30033229-30033549) | |
| 292-473, gnl|Hg17|chr16 (30033531-30033381) | |
| 292-473, gnl|loxAfr1|scaffold_1209 (74540-74215) | |
| 292-473, gnl|mm7|chr7 (122862097-122861781) | |
| 292-473, gnl|Mm7|chr7 (122861797-122861939) | |
| 292-473, gnl|monDom2|scaffold_5 (119642615-119642214) | |
| 292-473, gnl|panTro1|chr18 (30796146-30796466) | |
| 292-473, gnl|rheMac2|chr20 (28098655-28098972) | |
| 292-473, gnl|rn3|chr1 (186090845-186090529) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| jej (0.0989218) |