Non-Coding RNA Search

Ss1.1-Pig2-86F16.5

Sequence:


               
               GTTTACCAATCACTGCACATAAATTACTTTAGGAAAAAAACTTTGTCTTGCAAAATCCTC
CCATCTGGGATTAGCAAGGCTCTTCCGTTTCGCACCTGAAAGTCAATGCAAATTCCCCAT
CCTTTTTGAGTTGGATCAGAGATCTTCGTGTGTTTTTTTCACCTCTCCCCTGCTCACTTG
GTATCAAGAAAACAAAGTACATTTTCAGGGAAACCTGAAATCCCTAATACTTTGAAAAGC
CTATTACAATGGCGATGCTACCTTCTGGTAAACCATCAGCCCCGTGAACTCCAGATTAAC
GCACTGGAATGTCATCAAGGAAAAGTCAGTCGCGTTGTCTGTGCCATGTTCTCACCTGTG
TCTCTCCTCTTCCACTTCATGAATGCAAAAGCTTTACCTCCTGCAAAACGTCAGCACGTG
CAGTAGGACACCAGTATCCTAGGACAGAGAGCCATAAGCAGCCCTTTGGAGAACTGATGG
TGTCAACCAAAGACATGTGATTGCTTAACGGTTTCCCCTTACAAAGCAAGTGTTACCAAA
GTTGTGTTATCTCGAAAGCATTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTACCAATCACTGCACATAAATTACTTTAGGAAAAAAACTTTGTCTTGCAAAATCCTC
CCATCTGGGATTAGCAAGGCTCTTCCGTTTCGCACCTGAAAGTCAATGCAAATTCCCCAT
CCTTTTTGAGTTGGATCAGAGATCTTCGTGTGTTTTTTTCACCTCTCCCCTGCTCACTTG
GTATCAAGAAAACAAAGTACATTTTCAGGGAAACCTGAAATCCCTAATACTTTGAAAAGC
CTATTACAATGGCGATGCTACCTTCTGGTAAACCATCAGCCCCGTGAACTCCAGATTAAC
GCACTGGAATGTCATCAAGGAAAAGTCAGTCGCGTTGTCTGTGCCATGTTCTCACCTGTG
TCTCTCCTCTTCCACTTCATGAATGCAAAAGCTTTACCTCCTGCAAAACGTCAGCACGTG
CAGTAGGACACCAGTATCCTAGGACAGAGAGCCATAAGCAGCCCTTTGGAGAACTGATGG
TGTCAACCAAAGACATGTGATTGCTTAACGGTTTCCCCTTACAAAGCAAGTGTTACCAAA
GTTGTGTTATCTCGAAAGCATTAC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               152-306, - strand, RNAz p=0.998031
               

               
               387-506, + strand, RNAz p=0.573195

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               152-306, - strand, RNAz p=0.998031
               

               
               387-506, + strand, RNAz p=0.573195

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               423-518, + strand, RNAmicro p=0.996394
               

               
               417-545, - strand, RNAmicro p=0.995656

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               423-518, + strand, RNAmicro p=0.996394
               

               
               417-545, - strand, RNAmicro p=0.995656

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_015271, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_015271, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-564, gnl|bosTau2|chr17 (3287972-3287400)
               

               
               1-564, gnl|Hg17|chr4 (154614214-154614778)
               

               
               1-564, gnl|Mm7|chr3 (84277833-84277296)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-564, gnl|bosTau2|chr17 (3287972-3287400)
               

               
               1-564, gnl|Hg17|chr4 (154614214-154614778)
               

               
               1-564, gnl|Mm7|chr3 (84277833-84277296)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mgp (0.230681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)

	152-306, - strand, RNAz p=0.998031
	387-506, + strand, RNAz p=0.573195

	423-518, + strand, RNAmicro p=0.996394
	417-545, - strand, RNAmicro p=0.995656

	1-564, gnl\|bosTau2\|chr17 (3287972-3287400)
	1-564, gnl\|Hg17\|chr4 (154614214-154614778)
	1-564, gnl\|Mm7\|chr3 (84277833-84277296)