Non-Coding RNA Search

Ss1.1-Pig2-86G16.5

Sequence:


               
               AGCCCACCCTGCCAGCTAACCTCTCAGCCCGCCTGGGCCAGTTGGGCCCACTGGCCTCCG
CCTACTGGAACCAGCAGCAGTGGCGCCTGGGGACCCTACCCAGCGGGGACAGCACTGAGG
CGGGGGACTGCCGTGCTTGGGGGGCTGCTGCCGCGGCAGAGATCCCCGACTTCACCTCCT
ACCCCGAGGATCTCCGCCGCTTCCTGCTGTCGGCAGCCTGCCGGAGCTTTCCGCGGTGGC
TGCCCAGAGGCAGCGGTGGCCAAGTGGCCGGCTGTGAGGATCCCGACATCCCCTACCTGC
TCTTGGCCATCAAGTCGGAGCCAGGACGCTTTGCAGAACGACAAGCTGTGAGGGAGACGT
GGGGCGGGCCGGCTCCTGGGGTCCGGCTGCTCTTCCTGCTGGGGTCCCCGGAGGGCAAGG
CAGGGCCTGACCTAGGCTCCCTGGTGGCCTGGGAGAGCCGCCGCTACAGCGACCTGCTGC
TCTGGGATTTCCTCGATGTCCCCTTCAACCAGACGCTCAAGGACCTGCTGCTGCTGGCCT
GGCTGGGCCGCCACTGTCCCGGAGTGAGCTTCATCCTGCAAGCCCAGGATGACGCCTTTG
TGCACACCCCCGCCCTGCTGGACCACCTGCGGGCCCTGCCACCGGGCAAGGCGCGAGGCC
TCTACCTGGGAGAGGTCTTCACCCAGGCCAAGCCCCTCCGGAGGCCTGGAGACCCCTTCT
ATGTGCCGGGGTCCTTCTTCGAAGGCGGCTATCCGGCCTATGCGAGTGGCGGCGGCTACA
TCATCGCGGGGCGCCTGGCACCCTGGCTGCTGCAGGCAGCGGCCCGTGTGGCCCCCTTCC
CCTTCAACGATGTCTACACTGGCCTGTGCTTCCAAGCCTTGGGCCTGGCGCCCAGGACCC
ACAAAGGCTTCCTCACGGCCTGGCCAGCAGACCGCACGGCTGACCCCTGTGCTTTCCGAG
ACCTGCTGCTGGTGCGGCCCCTGAGCCCCCAGAACAGCATCCGCCTCTGGAAGCAGCTTC
AGGACCCTCAGCTCCAGTGCTGAACCTTGGCGGGGGGTGGGGCCAGACCTGCTGGCCCTT
CGGTCAGCCTCTCCTGCTAGGCCTCGATGGGAGGAAGGAGGTCCTAGAAAGGAGGCTGCT
TGAGCCCCTCCTGGGCCGCCCAAGAGGTGACAGACTGTTTATGAAAAGTCCATACTCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCCACCCTGCCAGCTAACCTCTCAGCCCGCCTGGGCCAGTTGGGCCCACTGGCCTCCG
CCTACTGGAACCAGCAGCAGTGGCGCCTGGGGACCCTACCCAGCGGGGACAGCACTGAGG
CGGGGGACTGCCGTGCTTGGGGGGCTGCTGCCGCGGCAGAGATCCCCGACTTCACCTCCT
ACCCCGAGGATCTCCGCCGCTTCCTGCTGTCGGCAGCCTGCCGGAGCTTTCCGCGGTGGC
TGCCCAGAGGCAGCGGTGGCCAAGTGGCCGGCTGTGAGGATCCCGACATCCCCTACCTGC
TCTTGGCCATCAAGTCGGAGCCAGGACGCTTTGCAGAACGACAAGCTGTGAGGGAGACGT
GGGGCGGGCCGGCTCCTGGGGTCCGGCTGCTCTTCCTGCTGGGGTCCCCGGAGGGCAAGG
CAGGGCCTGACCTAGGCTCCCTGGTGGCCTGGGAGAGCCGCCGCTACAGCGACCTGCTGC
TCTGGGATTTCCTCGATGTCCCCTTCAACCAGACGCTCAAGGACCTGCTGCTGCTGGCCT
GGCTGGGCCGCCACTGTCCCGGAGTGAGCTTCATCCTGCAAGCCCAGGATGACGCCTTTG
TGCACACCCCCGCCCTGCTGGACCACCTGCGGGCCCTGCCACCGGGCAAGGCGCGAGGCC
TCTACCTGGGAGAGGTCTTCACCCAGGCCAAGCCCCTCCGGAGGCCTGGAGACCCCTTCT
ATGTGCCGGGGTCCTTCTTCGAAGGCGGCTATCCGGCCTATGCGAGTGGCGGCGGCTACA
TCATCGCGGGGCGCCTGGCACCCTGGCTGCTGCAGGCAGCGGCCCGTGTGGCCCCCTTCC
CCTTCAACGATGTCTACACTGGCCTGTGCTTCCAAGCCTTGGGCCTGGCGCCCAGGACCC
ACAAAGGCTTCCTCACGGCCTGGCCAGCAGACCGCACGGCTGACCCCTGTGCTTTCCGAG
ACCTGCTGCTGGTGCGGCCCCTGAGCCCCCAGAACAGCATCCGCCTCTGGAAGCAGCTTC
AGGACCCTCAGCTCCAGTGCTGAACCTTGGCGGGGGGTGGGGCCAGACCTGCTGGCCCTT
CGGTCAGCCTCTCCTGCTAGGCCTCGATGGGAGGAAGGAGGTCCTAGAAAGGAGGCTGCT
TGAGCCCCTCCTGGGCCGCCCAAGAGGTGACAGACTGTTTATGAAAAGTCCATACTCTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55649277|ref|XP_524276.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55649277|ref|XP_524276.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               160-316, - strand, RNAz p=0.730136
               

               
               557-756, - strand, RNAz p=0.982017
               

               
               797-996, - strand, RNAz p=0.818564

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-316, - strand, RNAz p=0.730136
               

               
               557-756, - strand, RNAz p=0.982017
               

               
               797-996, - strand, RNAz p=0.818564

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1157, gnl|bosTau2|chr18 (45875863-45874721)
               

               
               1-1157, gnl|Hg17|chr19 (46624372-46623196)
               

               
               1-1157, gnl|Mm7|chr7 (22402048-22403188)
               


               
               441-1027, gnl|bosTau2|chr15 (35491862-35492460)
               

               
               441-1027, gnl|Hg17|chr11 (76428763-76429364)
               

               
               441-1027, gnl|Mm7|chr7 (94226149-94225551)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1157, gnl|bosTau2|chr18 (45875863-45874721)
               

               
               1-1157, gnl|Hg17|chr19 (46624372-46623196)
               

               
               1-1157, gnl|Mm7|chr7 (22402048-22403188)
               


               
               441-1027, gnl|bosTau2|chr15 (35491862-35492460)
               

               
               441-1027, gnl|Hg17|chr11 (76428763-76429364)
               

               
               441-1027, gnl|Mm7|chr7 (94226149-94225551)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               duo (0.172801)
               

               
               nco (0.161734)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               pla (0.133672)

	160-316, - strand, RNAz p=0.730136
	557-756, - strand, RNAz p=0.982017
	797-996, - strand, RNAz p=0.818564

	1-1157, gnl\|bosTau2\|chr18 (45875863-45874721)
	1-1157, gnl\|Hg17\|chr19 (46624372-46623196)
	1-1157, gnl\|Mm7\|chr7 (22402048-22403188)

	441-1027, gnl\|bosTau2\|chr15 (35491862-35492460)
	441-1027, gnl\|Hg17\|chr11 (76428763-76429364)
	441-1027, gnl\|Mm7\|chr7 (94226149-94225551)