Non-Coding RNA Search

Ss1.1-Pig2-86M09.5

Sequence:


               
               CTTGCACATAAATGTGCTATTTCTGTGAGTTTTAAAGTAGACAAGGGATAACAACCAAAG
AAGAAAAACTCATGAAGACTAGAGATCATAACGCATCATTTTGATAGTCACTCAACCAAG
TATTTTGTATTTTTTATGGATACTCTGAATGGCAATTAAATGTGAAACCCAATTTCTTGG
GCATATCAAATTCTAGAATCAAATCCACCTAAATTAAATCAACTAGCTCACATTTTCCCT
GTCCGCAAGTTTCACATCATGCTCATCCAAAATTTGACAGTGAGATTTTAAAGGAGAGAA
GAAAGAGGGTACTTGCTTATATGAATATTTTGTACTTGAACACTTGCAGCAGGATCTTGA
TGAATGTGTCTTATGTCCTACACATGTGTGCATCATGTGAAATGGACACCTCCAACTCAA
ACCAAACGGCTCCTTTGTAAAGTTATTACTTGCAGTTAAAGAGTATATTTGACTTAAACC
CGTCACTGTGCTCTCCAGCAACATAACAGGTGTATCACATGCACCATGGTGGTCGATTAG
GTCTTTTCGGAAAGGAAGAGAGACTCATAGACTTCAAAAACCAAACTAAACGTCAGGTTT
GCTGTGGACGGTCAGCATGGGACATCCGTTGCTCTGCGTGTTCAGTCACAGTCATCTGTG
TCTCCTCACCTGCTTTCTCTCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGCACATAAATGTGCTATTTCTGTGAGTTTTAAAGTAGACAAGGGATAACAACCAAAG
AAGAAAAACTCATGAAGACTAGAGATCATAACGCATCATTTTGATAGTCACTCAACCAAG
TATTTTGTATTTTTTATGGATACTCTGAATGGCAATTAAATGTGAAACCCAATTTCTTGG
GCATATCAAATTCTAGAATCAAATCCACCTAAATTAAATCAACTAGCTCACATTTTCCCT
GTCCGCAAGTTTCACATCATGCTCATCCAAAATTTGACAGTGAGATTTTAAAGGAGAGAA
GAAAGAGGGTACTTGCTTATATGAATATTTTGTACTTGAACACTTGCAGCAGGATCTTGA
TGAATGTGTCTTATGTCCTACACATGTGTGCATCATGTGAAATGGACACCTCCAACTCAA
ACCAAACGGCTCCTTTGTAAAGTTATTACTTGCAGTTAAAGAGTATATTTGACTTAAACC
CGTCACTGTGCTCTCCAGCAACATAACAGGTGTATCACATGCACCATGGTGGTCGATTAG
GTCTTTTCGGAAAGGAAGAGAGACTCATAGACTTCAAAAACCAAACTAAACGTCAGGTTT
GCTGTGGACGGTCAGCATGGGACATCCGTTGCTCTGCGTGTTCAGTCACAGTCATCTGTG
TCTCCTCACCTGCTTTCTCTCTCA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-681, gnl|bosTau2|chr20 (9197110-9197800)
               

               
               1-681, gnl|Hg17|chr5 (64482247-64481541)
               

               
               1-681, gnl|Mm7|chr13 (101632577-101633217)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-681, gnl|bosTau2|chr20 (9197110-9197800)
               

               
               1-681, gnl|Hg17|chr5 (64482247-64481541)
               

               
               1-681, gnl|Mm7|chr13 (101632577-101633217)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nco (0.161734)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

	1-681, gnl\|bosTau2\|chr20 (9197110-9197800)
	1-681, gnl\|Hg17\|chr5 (64482247-64481541)
	1-681, gnl\|Mm7\|chr13 (101632577-101633217)