Non-Coding RNA Search

Ss1.1-Pig2-87A17.5

Sequence:


               
               GCAGGACCGTGGTTCTCCCCACCTGACACAGCTGAGGCCCAGCCAGAGGCCAGGCCGTCC
GCCATGTGACCAGGACCAGGTCTGCCCGGCCCAGGCCAGCACAGGGCCTGGGGACACAGC
CCCTGCGCCTGGGAGACCTCACACTTGTTCCCCCGCCGCCCCAGTGGCTCTGCCGTGCAG
GCCAGTTACTGCCACCTTCTCTTCCCCTCTGTCCTTCCCTCTAACTGCATGAACCGCTGA
CTGTGCACCCGGATGGGCGCGGTGGGGACCCCGTATGCTGACTGGAATGATTCTAGAACC
AAAATAAAGCTGGGGCAGGATGGAGGGGGCTTCTGGAGAGCCCTGCTCGCCCCGAACCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGACCGTGGTTCTCCCCACCTGACACAGCTGAGGCCCAGCCAGAGGCCAGGCCGTCC
GCCATGTGACCAGGACCAGGTCTGCCCGGCCCAGGCCAGCACAGGGCCTGGGGACACAGC
CCCTGCGCCTGGGAGACCTCACACTTGTTCCCCCGCCGCCCCAGTGGCTCTGCCGTGCAG
GCCAGTTACTGCCACCTTCTCTTCCCCTCTGTCCTTCCCTCTAACTGCATGAACCGCTGA
CTGTGCACCCGGATGGGCGCGGTGGGGACCCCGTATGCTGACTGGAATGATTCTAGAACC
AAAATAAAGCTGGGGCAGGATGGAGGGGGCTTCTGGAGAGCCCTGCTCGCCCCGAACCAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               5-122, - strand, RNAz p=0.99997
               

               
               21-130, - strand, RNAz p=0.998453

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-122, - strand, RNAz p=0.99997
               

               
               21-130, - strand, RNAz p=0.998453

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               5-359, gnl|bosTau2|chr29 (36505936-36505582)
               

               
               5-359, gnl|canFam2|chr18 (53361623-53361255)
               

               
               5-359, gnl|dasNov1|scaffold_151909 (983-1299)
               

               
               5-359, gnl|hg17|chr11 (66574428-66574827)
               

               
               5-359, gnl|Hg17|chr11 (66574539-66574889)
               

               
               5-359, gnl|mm7|chr19 (4341106-4340746)
               

               
               5-359, gnl|oryCun1|scaffold_122624 (806-467)
               

               
               5-359, gnl|panTro1|chr9 (67830018-67830417)
               

               
               5-359, gnl|rheMac2|chr14 (7436590-7436194)
               

               
               5-359, gnl|rn3|chr1 (207174492-207174122)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-359, gnl|bosTau2|chr29 (36505936-36505582)
               

               
               5-359, gnl|canFam2|chr18 (53361623-53361255)
               

               
               5-359, gnl|dasNov1|scaffold_151909 (983-1299)
               

               
               5-359, gnl|hg17|chr11 (66574428-66574827)
               

               
               5-359, gnl|Hg17|chr11 (66574539-66574889)
               

               
               5-359, gnl|mm7|chr19 (4341106-4340746)
               

               
               5-359, gnl|oryCun1|scaffold_122624 (806-467)
               

               
               5-359, gnl|panTro1|chr9 (67830018-67830417)
               

               
               5-359, gnl|rheMac2|chr14 (7436590-7436194)
               

               
               5-359, gnl|rn3|chr1 (207174492-207174122)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	5-122, - strand, RNAz p=0.99997
	21-130, - strand, RNAz p=0.998453

	5-359, gnl\|bosTau2\|chr29 (36505936-36505582)
	5-359, gnl\|canFam2\|chr18 (53361623-53361255)
	5-359, gnl\|dasNov1\|scaffold_151909 (983-1299)
	5-359, gnl\|hg17\|chr11 (66574428-66574827)
	5-359, gnl\|Hg17\|chr11 (66574539-66574889)
	5-359, gnl\|mm7\|chr19 (4341106-4340746)
	5-359, gnl\|oryCun1\|scaffold_122624 (806-467)
	5-359, gnl\|panTro1\|chr9 (67830018-67830417)
	5-359, gnl\|rheMac2\|chr14 (7436590-7436194)
	5-359, gnl\|rn3\|chr1 (207174492-207174122)