Non-Coding RNA Search

Ss1.1-Pig2-87B18.5

Sequence:


               
               GACCTCTCCGCACAGGCCCTGCCTGTTCCCATGGTGCTTCTCTTCCTGAGCTCCTGTATC
CTCCACCAGGGAAAGAGCAGATGAGCAGTGAGCTGGTTTCTGGCCCTTTGGTGGCAAGGG
AGCTTGATCTCCCCTTTGGCCCCTCCCCCCCTTTTCCAGATCTTCAATATTGTGATGTAA
CAGCCATAAGAGCTGTAAGAGGAACTATGGGCTTTGGGTGCTTTCTTGGGTTGAAAGAGG
GGTGGGTGGGGGTGGGGGGCTGCATGCAGGGGTATGAAGGCAGCCCAAGGATTCCCAGAG
ACCCGGGAGGAAATCGTTTGGAATAAATGTGTTATTGTGTTATTGTTGCATTGCTGTGTC
GTGAAGATAAGAAATTGTTCTGTATGCTAAAGCTTCCTCCTCAATAAAAAGATAAAGGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCTCTCCGCACAGGCCCTGCCTGTTCCCATGGTGCTTCTCTTCCTGAGCTCCTGTATC
CTCCACCAGGGAAAGAGCAGATGAGCAGTGAGCTGGTTTCTGGCCCTTTGGTGGCAAGGG
AGCTTGATCTCCCCTTTGGCCCCTCCCCCCCTTTTCCAGATCTTCAATATTGTGATGTAA
CAGCCATAAGAGCTGTAAGAGGAACTATGGGCTTTGGGTGCTTTCTTGGGTTGAAAGAGG
GGTGGGTGGGGGTGGGGGGCTGCATGCAGGGGTATGAAGGCAGCCCAAGGATTCCCAGAG
ACCCGGGAGGAAATCGTTTGGAATAAATGTGTTATTGTGTTATTGTTGCATTGCTGTGTC
GTGAAGATAAGAAATTGTTCTGTATGCTAAAGCTTCCTCCTCAATAAAAAGATAAAGGGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               188-307, - strand, RNAz p=0.979981

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               188-307, - strand, RNAz p=0.979981

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               220-317, + strand, RNAmicro p=0.978725

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               220-317, + strand, RNAmicro p=0.978725

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-420, gnl|bosTau2|chrX (23532638-23532217)
               

               
               1-420, gnl|canFam2|chrX (59105240-59105709)
               

               
               1-420, gnl|dasNov1|scaffold_38524 (10051-9588)
               

               
               1-420, gnl|echTel1|scaffold_321263 (3132-2682)
               

               
               1-420, gnl|hg17|chrX (71129891-71130340)
               

               
               1-420, gnl|Hg17|chrX (71130401-71129988)
               

               
               1-420, gnl|loxAfr1|scaffold_6532 (77688-77228)
               

               
               1-420, gnl|mm7|chrX (97393820-97394257)
               

               
               1-420, gnl|Mm7|chrX (97394324-97393909)
               

               
               1-420, gnl|oryCun1|scaffold_203442 (92791-92313)
               

               
               1-420, gnl|panTro1|chrX (73396041-73396489)
               

               
               1-420, gnl|rheMac2|chrX (71044348-71044797)
               

               
               1-420, gnl|rn3|chrX (90207594-90208059)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-420, gnl|bosTau2|chrX (23532638-23532217)
               

               
               1-420, gnl|canFam2|chrX (59105240-59105709)
               

               
               1-420, gnl|dasNov1|scaffold_38524 (10051-9588)
               

               
               1-420, gnl|echTel1|scaffold_321263 (3132-2682)
               

               
               1-420, gnl|hg17|chrX (71129891-71130340)
               

               
               1-420, gnl|Hg17|chrX (71130401-71129988)
               

               
               1-420, gnl|loxAfr1|scaffold_6532 (77688-77228)
               

               
               1-420, gnl|mm7|chrX (97393820-97394257)
               

               
               1-420, gnl|Mm7|chrX (97394324-97393909)
               

               
               1-420, gnl|oryCun1|scaffold_203442 (92791-92313)
               

               
               1-420, gnl|panTro1|chrX (73396041-73396489)
               

               
               1-420, gnl|rheMac2|chrX (71044348-71044797)
               

               
               1-420, gnl|rn3|chrX (90207594-90208059)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	1-420, gnl\|bosTau2\|chrX (23532638-23532217)
	1-420, gnl\|canFam2\|chrX (59105240-59105709)
	1-420, gnl\|dasNov1\|scaffold_38524 (10051-9588)
	1-420, gnl\|echTel1\|scaffold_321263 (3132-2682)
	1-420, gnl\|hg17\|chrX (71129891-71130340)
	1-420, gnl\|Hg17\|chrX (71130401-71129988)
	1-420, gnl\|loxAfr1\|scaffold_6532 (77688-77228)
	1-420, gnl\|mm7\|chrX (97393820-97394257)
	1-420, gnl\|Mm7\|chrX (97394324-97393909)
	1-420, gnl\|oryCun1\|scaffold_203442 (92791-92313)
	1-420, gnl\|panTro1\|chrX (73396041-73396489)
	1-420, gnl\|rheMac2\|chrX (71044348-71044797)
	1-420, gnl\|rn3\|chrX (90207594-90208059)