Non-Coding RNA Search

Ss1.1-Pig2-88B09.5

Sequence:


               
               GGACTACCGCCCGTCTGGCAGACCAGGTTCCTATGAAGAAGGACCCAAGAACTATGATGC
GTACACAGCAGGACTGAGTGAGGAGGAACAGCTGGAGCAAGCGCTGAGAGCCAGCCTCTG
GGACCGAGGAAATAGCAGAAATAGCCCCCCGCCCTATGGGTTCCATCTCTCGCCAGAAGA
AGAAATGAGGAGAAAGCGACTTTATAGATTCGACCACCAGCAAGGGGACCCATCCTGGTG
AACAGATGTGGTCCAGTTGTGCAGTCATTGCCCCCAAAGCCCCGCATGGTTTTAAGCAGA
AGCAGAGGGCACCGTGACCATCACAGGTTGCCCACGTCTGCCGTGGCCCGTCACCCCATG
ACCGCCGTGAGTCTAATTCTCAAGCAGGTGGACGTCTTGAGCCCCGGCTTGCTGGACACA
GCCCACCGCTCCCTGGGAGCCACCCTCCTCTGGCCTTGTTCTCTCTCACAGACAGGAGGT
TGGCGTCTCCACGTAGGGCCCACTCTCCACATTCCTTTCTCTCACTGCTGACTCAGCGGC
GCTCTTGCCTTGTTTTGTCTTTGAAGACCAGGACCTTCGCCAGGAGGTTTGTGTTCACCA
GCCCGGAAGACCTGGCCCTATTCTGCTCGGTGCTTGACGTGGCAGGAAGCAGGGAGCCAT
TCCTCATCCCCTTTCAGGTTGCCATGGTGACCGTCCAGGCGCAGGATGCAGCTACCATCA
CAGGATGCTATTCCAGTGCCCTGGGGCCTCGACTCCTTAGGCCCCAATATCTGGGTGTTG
TTTACAGTAAAGCTGCCTTCACAGACTGTATGACTGGAGAAGCTCAAGTAAGACCTCAGA
GGGGAACCCACCCACACGCTCTATGACATAACAGGTGGCACCAGCAATCCGGCCTCACGG
CAGCCTCTCCAGTGACTATATGTGTTCCTGGAGATGCACTTGGTATTGAGCTAATCAGCA
AAGCAGCGGCAGGTGCCGCATGCCGAGTAGGGCGACCAGTGCGTGGTCACTGAGGAAGTA
CTCTTTTTCTCTTGAGGAAGTATTTTTTTTTCTCCTAAAAGTGCCTTTTAATTGACCACT
GTCACAGCCACTTTCCTGCTCAAGCATCCAAGACACTCCCCTCACCCACAGATTCCAAGT
CACATACGATGGTTCCCGGTGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACTACCGCCCGTCTGGCAGACCAGGTTCCTATGAAGAAGGACCCAAGAACTATGATGC
GTACACAGCAGGACTGAGTGAGGAGGAACAGCTGGAGCAAGCGCTGAGAGCCAGCCTCTG
GGACCGAGGAAATAGCAGAAATAGCCCCCCGCCCTATGGGTTCCATCTCTCGCCAGAAGA
AGAAATGAGGAGAAAGCGACTTTATAGATTCGACCACCAGCAAGGGGACCCATCCTGGTG
AACAGATGTGGTCCAGTTGTGCAGTCATTGCCCCCAAAGCCCCGCATGGTTTTAAGCAGA
AGCAGAGGGCACCGTGACCATCACAGGTTGCCCACGTCTGCCGTGGCCCGTCACCCCATG
ACCGCCGTGAGTCTAATTCTCAAGCAGGTGGACGTCTTGAGCCCCGGCTTGCTGGACACA
GCCCACCGCTCCCTGGGAGCCACCCTCCTCTGGCCTTGTTCTCTCTCACAGACAGGAGGT
TGGCGTCTCCACGTAGGGCCCACTCTCCACATTCCTTTCTCTCACTGCTGACTCAGCGGC
GCTCTTGCCTTGTTTTGTCTTTGAAGACCAGGACCTTCGCCAGGAGGTTTGTGTTCACCA
GCCCGGAAGACCTGGCCCTATTCTGCTCGGTGCTTGACGTGGCAGGAAGCAGGGAGCCAT
TCCTCATCCCCTTTCAGGTTGCCATGGTGACCGTCCAGGCGCAGGATGCAGCTACCATCA
CAGGATGCTATTCCAGTGCCCTGGGGCCTCGACTCCTTAGGCCCCAATATCTGGGTGTTG
TTTACAGTAAAGCTGCCTTCACAGACTGTATGACTGGAGAAGCTCAAGTAAGACCTCAGA
GGGGAACCCACCCACACGCTCTATGACATAACAGGTGGCACCAGCAATCCGGCCTCACGG
CAGCCTCTCCAGTGACTATATGTGTTCCTGGAGATGCACTTGGTATTGAGCTAATCAGCA
AAGCAGCGGCAGGTGCCGCATGCCGAGTAGGGCGACCAGTGCGTGGTCACTGAGGAAGTA
CTCTTTTTCTCTTGAGGAAGTATTTTTTTTTCTCCTAAAAGTGCCTTTTAATTGACCACT
GTCACAGCCACTTTCCTGCTCAAGCATCCAAGACACTCCCCTCACCCACAGATTCCAAGT
CACATACGATGGTTCCCGGTGCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|52545661|emb|CAC21658.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|52545661|emb|CAC21658.2|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               588-732, - strand, RNAz p=0.962784
               

               
               938-1128, - strand, RNAz p=0.999998

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               588-732, - strand, RNAz p=0.962784
               

               
               938-1128, - strand, RNAz p=0.999998

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               127-799, gnl|bosTau2|chr21 (31111884-31112562)
               

               
               127-799, gnl|Hg17|chr2 (227685650-227686314)
               

               
               127-799, gnl|Mm7|chr1 (82651547-82652213)
               


               
               938-1143, gnl|bosTau2|chr6 (15429882-15429685)
               

               
               938-1143, gnl|Hg17|chr2 (227686479-227686699)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               127-799, gnl|bosTau2|chr21 (31111884-31112562)
               

               
               127-799, gnl|Hg17|chr2 (227685650-227686314)
               

               
               127-799, gnl|Mm7|chr1 (82651547-82652213)
               


               
               938-1143, gnl|bosTau2|chr6 (15429882-15429685)
               

               
               938-1143, gnl|Hg17|chr2 (227686479-227686699)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               duo (0.172801)
               

               
               cag (0.151194)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               cag (0.151194)

	588-732, - strand, RNAz p=0.962784
	938-1128, - strand, RNAz p=0.999998

	127-799, gnl\|bosTau2\|chr21 (31111884-31112562)
	127-799, gnl\|Hg17\|chr2 (227685650-227686314)
	127-799, gnl\|Mm7\|chr1 (82651547-82652213)

	938-1143, gnl\|bosTau2\|chr6 (15429882-15429685)
	938-1143, gnl\|Hg17\|chr2 (227686479-227686699)