Non-Coding RNA Search

Ss1.1-Pig2-89K02.5

Sequence:


               
               GGCGGGCGGTCGGGGTGAAGGGGCGTGAAGGTTATAAGCACAGAGGCGGCGTAGTTCACA
CACTTCAGAGGGACAGCTTCTCACGCTTTGTTTTCTCTCTTCATCCATTGTGATTCTAGG
CTTCAAGTTGCATTGGGGTTCCTCTGTACAGCAAGATATTTCTTGCCCTTTGTTAATGCA
TTGTTGTAAAGTATTTGATGTACATTACAGATTAAAGAAGAAAAGCGCATCGTGTATATT
ACACCAATGCAGCGGCGTTTCCTCATCTATGGTTCTAAATATTGCTTCAATTTCAGACTT
TTGAAAGATGTATGGATTTCCCAGGTTTTCTTTTCTTTTCTTCCTCCCAGTATGTTTTAA
CAGAGAAAAAAAAAATGGGGAAAAAAGAATATTTAGCAGTATTGTTCGTTCTGATATGTG
AATTTGTTTGTGGCAACTAAGCAAGGCATTCAGCAGTTTCTGACAATTAACATACATCAT
TCCACTCTCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGGCGGTCGGGGTGAAGGGGCGTGAAGGTTATAAGCACAGAGGCGGCGTAGTTCACA
CACTTCAGAGGGACAGCTTCTCACGCTTTGTTTTCTCTCTTCATCCATTGTGATTCTAGG
CTTCAAGTTGCATTGGGGTTCCTCTGTACAGCAAGATATTTCTTGCCCTTTGTTAATGCA
TTGTTGTAAAGTATTTGATGTACATTACAGATTAAAGAAGAAAAGCGCATCGTGTATATT
ACACCAATGCAGCGGCGTTTCCTCATCTATGGTTCTAAATATTGCTTCAATTTCAGACTT
TTGAAAGATGTATGGATTTCCCAGGTTTTCTTTTCTTTTCTTCCTCCCAGTATGTTTTAA
CAGAGAAAAAAAAAATGGGGAAAAAAGAATATTTAGCAGTATTGTTCGTTCTGATATGTG
AATTTGTTTGTGGCAACTAAGCAAGGCATTCAGCAGTTTCTGACAATTAACATACATCAT
TCCACTCTCCTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               118-237, + strand, RNAz p=0.672436

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-237, + strand, RNAz p=0.672436

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               184-256, + strand, RNAmicro p=0.945838

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               184-256, + strand, RNAmicro p=0.945838

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_001332, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001332, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               5-492, gnl|bosTau2|chr20 (35940938-35941427)
               

               
               5-492, gnl|Hg17|chr5 (11026259-11025771)
               

               
               5-492, gnl|Mm7|chr15 (31135417-31135909)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-492, gnl|bosTau2|chr20 (35940938-35941427)
               

               
               5-492, gnl|Hg17|chr5 (11026259-11025771)
               

               
               5-492, gnl|Mm7|chr15 (31135417-31135909)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               fco (0.157208)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)
               

               
               ebs (0.118301)

	5-492, gnl\|bosTau2\|chr20 (35940938-35941427)
	5-492, gnl\|Hg17\|chr5 (11026259-11025771)
	5-492, gnl\|Mm7\|chr15 (31135417-31135909)