Ss1.1-Pig2-8G18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGTTCACTCTCACATCTGGGACCGCACGGGATCTGCCAGCTCAGAAAGAGTTTCTGAAA GGCAGAGCAAGGGGAAGACAAGAGGCTTTCAGAGAGGGGCAGAGAAGTCCTGGCTGCCTG TCCCCACTTTGTTACTTGCTCGCTATGGAATATTGAACAATTTCATTTGCCAGTCTGAAT CTTCGCAGTCATAGCTGTTACCTGGTGGTGAATTACCTCCCAGGCAGGGTTCTGGTGCAG ATTTACAAAGGTTCCCACCAAGCCGAAGCCATGAGGATCCATGGCCTCACCCTGCTCTTC TTCCTCCTTCTGGCTGCTCCCATGCTCTTGGTGGAGGCCAAAAAGGAAGGAAAGAATAGA CGTGGCCACAAAGCCAGTGCAGATAAATCGCACGCTCTTGACAATCCCCAGGTTGAGCTG AAAAGCCAGCTGCCCAAGCACCTGCCCAAAGGCAATTTCATCACCCAAGACCAAGCCGAC TGCAGATGGGAGGTGACCGAGCAGCAGGAGGGCATCGCCCTGAAGGTCGAGTGCACCCGA GAGGACAGCAAGTTTTCCTGTGTCTTCACTGGCAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGTTCACTCTCACATCTGGGACCGCACGGGATCTGCCAGCTCAGAAAGAGTTTCTGAAA GGCAGAGCAAGGGGAAGACAAGAGGCTTTCAGAGAGGGGCAGAGAAGTCCTGGCTGCCTG TCCCCACTTTGTTACTTGCTCGCTATGGAATATTGAACAATTTCATTTGCCAGTCTGAAT CTTCGCAGTCATAGCTGTTACCTGGTGGTGAATTACCTCCCAGGCAGGGTTCTGGTGCAG ATTTACAAAGGTTCCCACCAAGCCGAAGCCATGAGGATCCATGGCCTCACCCTGCTCTTC TTCCTCCTTCTGGCTGCTCCCATGCTCTTGGTGGAGGCCAAAAAGGAAGGAAAGAATAGA CGTGGCCACAAAGCCAGTGCAGATAAATCGCACGCTCTTGACAATCCCCAGGTTGAGCTG AAAAGCCAGCTGCCCAAGCACCTGCCCAAAGGCAATTTCATCACCCAAGACCAAGCCGAC TGCAGATGGGAGGTGACCGAGCAGCAGGAGGGCATCGCCCTGAAGGTCGAGTGCACCCGA GAGGACAGCAAGTTTTCCTGTGTCTTCACTGGCAAT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 249-368, - strand, RNAz p=0.597049 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 249-368, - strand, RNAz p=0.597049 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 102-248, gnl|bosTau2|chr29 (7557687-7557536) | |
| 102-248, gnl|Hg17|chr4 (15615670-15615518) | |
| 249-576, gnl|bosTau2|chr29 (7556540-7556213) | |
| 249-576, gnl|canFam2|chr3 (67276101-67275583) | |
| 249-576, gnl|canFam2|chr3 (67206079-67206493) | |
| 249-576, gnl|hg17|chr4 (15613986-15614441) | |
| 249-576, gnl|hg17|chr4 (15985428-15985850) | |
| 249-576, gnl|Hg17|chr4 (15614546-15614228) | |
| 249-576, gnl|loxAfr1|scaffold_48674 (3400-3874) | |
| 249-576, gnl|loxAfr1|scaffold_48674 (3880-3502) | |
| 249-576, gnl|mm7|chr5 (43299957-43300430) | |
| 249-576, gnl|mm7|chr5 (43300436-43300012) | |
| 249-576, gnl|Mm7|chr5 (43300535-43300199) | |
| 249-576, gnl|monDom2|scaffold_10 (24014037-24013580) | |
| 249-576, gnl|oryCun1|scaffold_174831 (1662-2225) | |
| 249-576, gnl|oryCun1|scaffold_214463 (27333-27750) | |
| 249-576, gnl|panTro1|chr3 (15968029-15968484) | |
| 249-576, gnl|panTro1|chr3 (16334298-16334720) | |
| 249-576, gnl|rheMac2|chr5 (10749431-10749886) | |
| 249-576, gnl|rheMac2|chr5 (11125518-11125936) | |
| 249-576, gnl|rn3|chr14 (72245196-72244756) | |
| 249-576, gnl|rn3|chr14 (72244750-72245141) | |
| 249-576, gnl|xenTro1|scaffold_158 (366484-366922) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 102-248, gnl|bosTau2|chr29 (7557687-7557536) | |
| 102-248, gnl|Hg17|chr4 (15615670-15615518) | |
| 249-576, gnl|bosTau2|chr29 (7556540-7556213) | |
| 249-576, gnl|canFam2|chr3 (67276101-67275583) | |
| 249-576, gnl|canFam2|chr3 (67206079-67206493) | |
| 249-576, gnl|hg17|chr4 (15613986-15614441) | |
| 249-576, gnl|hg17|chr4 (15985428-15985850) | |
| 249-576, gnl|Hg17|chr4 (15614546-15614228) | |
| 249-576, gnl|loxAfr1|scaffold_48674 (3400-3874) | |
| 249-576, gnl|loxAfr1|scaffold_48674 (3880-3502) | |
| 249-576, gnl|mm7|chr5 (43299957-43300430) | |
| 249-576, gnl|mm7|chr5 (43300436-43300012) | |
| 249-576, gnl|Mm7|chr5 (43300535-43300199) | |
| 249-576, gnl|monDom2|scaffold_10 (24014037-24013580) | |
| 249-576, gnl|oryCun1|scaffold_174831 (1662-2225) | |
| 249-576, gnl|oryCun1|scaffold_214463 (27333-27750) | |
| 249-576, gnl|panTro1|chr3 (15968029-15968484) | |
| 249-576, gnl|panTro1|chr3 (16334298-16334720) | |
| 249-576, gnl|rheMac2|chr5 (10749431-10749886) | |
| 249-576, gnl|rheMac2|chr5 (11125518-11125936) | |
| 249-576, gnl|rn3|chr14 (72245196-72244756) | |
| 249-576, gnl|rn3|chr14 (72244750-72245141) | |
| 249-576, gnl|xenTro1|scaffold_158 (366484-366922) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.195008) | |
| ton (0.1755) | |
| ctl (0.153069) |