Non-Coding RNA Search

Ss1.1-Pig2-90A23.5

Sequence:


               
               GCCAGGGCGGAGGAGAGACAGCCTGTGTTCTCCACAGGAACCACTTGGTTCCTGCAGCTG
TTCCCACCTTTCTACGCCCCTTCCTGTCTGAGTTCCCCTCACTCCCTTTTGTCTCTAGAC
CACGTTTGGCTCTCCTGAATGCCCCATTTGTACCCAAGTTCCTCTCCTTCCCACCTACCA
GCCCCTGGTCTGTGCCCCTGACCTGCCCCTCATGCTCTCCTGCTTTCTGCTTAGCTGGCT
TCTTCCTGTCTCAGTGAGGCTCCACATCAGCCTGGGCAGAGGGCTTCTGAGCTGGGCCCA
ATTTTTTCCCCTCCCGCAAAGGAGATGCCCCACCTTCCACCTGAATTTCTGCATCCCCTT
CAGATGCCTGTCTTGGCCCACCTCTACCTGTACCACAGCCACTTTCCTGCCCCCACAGAC
AGCCTTGACAGAGGCCTAGAAAGAGTAGGGCAGAGGGTGAGGACTCAGCTCTTCTCTGTG
GGTGCCCAGGCTCTGCCAGGGGAGAAGAAGGTGGTACCCACTCTCTCCCTAGCCCCACTC
GCAGTCATTCCTCTGCAGGTAGCTAGGAGGACCGAACCCGGCCAGGCGGGTGCCCTTGGA
CAGCGTGGAAGGCGCATGCCCTTACCCTGGGAAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAGGGCGGAGGAGAGACAGCCTGTGTTCTCCACAGGAACCACTTGGTTCCTGCAGCTG
TTCCCACCTTTCTACGCCCCTTCCTGTCTGAGTTCCCCTCACTCCCTTTTGTCTCTAGAC
CACGTTTGGCTCTCCTGAATGCCCCATTTGTACCCAAGTTCCTCTCCTTCCCACCTACCA
GCCCCTGGTCTGTGCCCCTGACCTGCCCCTCATGCTCTCCTGCTTTCTGCTTAGCTGGCT
TCTTCCTGTCTCAGTGAGGCTCCACATCAGCCTGGGCAGAGGGCTTCTGAGCTGGGCCCA
ATTTTTTCCCCTCCCGCAAAGGAGATGCCCCACCTTCCACCTGAATTTCTGCATCCCCTT
CAGATGCCTGTCTTGGCCCACCTCTACCTGTACCACAGCCACTTTCCTGCCCCCACAGAC
AGCCTTGACAGAGGCCTAGAAAGAGTAGGGCAGAGGGTGAGGACTCAGCTCTTCTCTGTG
GGTGCCCAGGCTCTGCCAGGGGAGAAGAAGGTGGTACCCACTCTCTCCCTAGCCCCACTC
GCAGTCATTCCTCTGCAGGTAGCTAGGAGGACCGAACCCGGCCAGGCGGGTGCCCTTGGA
CAGCGTGGAAGGCGCATGCCCTTACCCTGGGAAGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               430-542, + strand, RNAz p=0.824841

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               430-542, + strand, RNAz p=0.824841

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-632, gnl|bosTau2|chr2 (64349719-64350328)
               

               
               1-632, gnl|Hg17|chr2 (220241600-220240996)
               

               
               1-632, gnl|Mm7|chr1 (75712654-75712081)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-632, gnl|bosTau2|chr2 (64349719-64350328)
               

               
               1-632, gnl|Hg17|chr2 (220241600-220240996)
               

               
               1-632, gnl|Mm7|chr1 (75712654-75712081)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               hlv (0.139256)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               hlv (0.139256)

	1-632, gnl\|bosTau2\|chr2 (64349719-64350328)
	1-632, gnl\|Hg17\|chr2 (220241600-220240996)
	1-632, gnl\|Mm7\|chr1 (75712654-75712081)