Non-Coding RNA Search

Ss1.1-Pig2-90L17.5

Sequence:


               
               ATCTGCTGTAAGCTTTCCTACCTGTTTCTGTAGCCAGCAGAGAGCATCCGGTAAATACTT
GGACATCCCCCAGGGCCGGTGCCTTCCCGCCCTGCCCGAGCATGGACGCCGTGTCGCTGG
GTGCTGGTGACTGGCCCATTATGTGCAGCGGACTGTCTCAGCAGAACCACTGACCTTCCC
GGGAGCCGCCCGCCCGCCCGCGGCCCCTGCCGCCCCTGCTGCCGGTCTCGGGCCCGGAGA
GCAGATGCTGTCTTGTCACGTACAGGACTTTCTTTCAAAAGAACTGAAGAGTGTCTGTGT
CTTCCCAGCAGCCCCTCGCCCCGACCCTGTTTCCCAGAGGCCAAGGCCAGTCGGTCCCCG
GCTCTCGGGCCTGGCCTTCTCTGGCTGCACCCACCTTGGCGATGGTCAGTGAGTCTTGGA
AGCCCAGCCCCCGGCCCGGCCCGGCCCGGCCCCCGCTCTGTGGTGGCCATGATGCGGTAC
AGGGCACCCTCCTTCCCACATCTGCGGGTGTTCTCAATAAACAGCAGAGGTGTTTGGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTGCTGTAAGCTTTCCTACCTGTTTCTGTAGCCAGCAGAGAGCATCCGGTAAATACTT
GGACATCCCCCAGGGCCGGTGCCTTCCCGCCCTGCCCGAGCATGGACGCCGTGTCGCTGG
GTGCTGGTGACTGGCCCATTATGTGCAGCGGACTGTCTCAGCAGAACCACTGACCTTCCC
GGGAGCCGCCCGCCCGCCCGCGGCCCCTGCCGCCCCTGCTGCCGGTCTCGGGCCCGGAGA
GCAGATGCTGTCTTGTCACGTACAGGACTTTCTTTCAAAAGAACTGAAGAGTGTCTGTGT
CTTCCCAGCAGCCCCTCGCCCCGACCCTGTTTCCCAGAGGCCAAGGCCAGTCGGTCCCCG
GCTCTCGGGCCTGGCCTTCTCTGGCTGCACCCACCTTGGCGATGGTCAGTGAGTCTTGGA
AGCCCAGCCCCCGGCCCGGCCCGGCCCGGCCCCCGCTCTGTGGTGGCCATGATGCGGTAC
AGGGCACCCTCCTTCCCACATCTGCGGGTGTTCTCAATAAACAGCAGAGGTGTTTGGGCC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-540, gnl|bosTau2|chr15 (30254869-30254291)
               

               
               1-540, gnl|Hg17|chr11 (8672050-8671479)
               

               
               1-540, gnl|Mm7|chr7 (105439757-105439188)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-540, gnl|bosTau2|chr15 (30254869-30254291)
               

               
               1-540, gnl|Hg17|chr11 (8672050-8671479)
               

               
               1-540, gnl|Mm7|chr7 (105439757-105439188)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ece (0.229305)
               

               
               col (0.195008)
               

               
               csp (0.161186)
               

               
               eru (0.120048)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               csp (0.161186)
               

               
               eru (0.120048)

	1-540, gnl\|bosTau2\|chr15 (30254869-30254291)
	1-540, gnl\|Hg17\|chr11 (8672050-8671479)
	1-540, gnl\|Mm7\|chr7 (105439757-105439188)