Non-Coding RNA Search

Ss1.1-Pig2-91K21.5

Sequence:


               
               AATTCCTGGAGTCCCTGGAGCCCGACCTGCCGGCCCTGAGAGCCATGGGCCTCCACCTGT
GGGCTGCAGGTTCTGAAACCTATCCGGCTGGAATCAGCGATTTGCTGGCTGAGGTCTCAG
CCGAAGTGGATGCGCCAGTGCCTGGGTACCTCTCTGCCCCCGAGAACATAATGGACACGT
GCCTGTATATCTTCACCTCTGGCACCACAGGCCTCCCCAAGGCTGCTCGGATCAGTCATC
TGAAGGTCCTGCAATGCCAGGGGTTCTACCAGCTGTGCGGTGCCCGCCAGGAGGATGTGA
TCTACCTCGCCCTCCCACTCTACCATATGTCCGGCTCCCTGCTGGGCATCGTGGGATGCT
TGGGCATTGGGGCCACGGTGGTGCTGAAGTCCAAGTTCTCAGCTGGTCAGTTCTGGGAGG
ACTGCCAGCAGCATAGGGTGACGGTGTTCCAGTACATTGGGGAGTTATGCCGATACCTTG
TCAACCAGCCCCCGAACCAGGCAGAGCATGGACATAAGGTCCGGATGGCGGTGGGCAGCG
GGCTGCGGCCGGACACCTGGGAGCGTTTTGTGCGGCGCTTCGGGCCCCTGCGGGTGCTGG
AGACCTACGGACTGACAGAGGGCAACGTGGCCACTTTCAACTACACAGGCCAGCGGGGAG
CTGTGGGGCGCGCTTCCTGGCTGTACAAGCATGTCTTCCCCTTCTCTTTGATTCGCTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTCCTGGAGTCCCTGGAGCCCGACCTGCCGGCCCTGAGAGCCATGGGCCTCCACCTGT
GGGCTGCAGGTTCTGAAACCTATCCGGCTGGAATCAGCGATTTGCTGGCTGAGGTCTCAG
CCGAAGTGGATGCGCCAGTGCCTGGGTACCTCTCTGCCCCCGAGAACATAATGGACACGT
GCCTGTATATCTTCACCTCTGGCACCACAGGCCTCCCCAAGGCTGCTCGGATCAGTCATC
TGAAGGTCCTGCAATGCCAGGGGTTCTACCAGCTGTGCGGTGCCCGCCAGGAGGATGTGA
TCTACCTCGCCCTCCCACTCTACCATATGTCCGGCTCCCTGCTGGGCATCGTGGGATGCT
TGGGCATTGGGGCCACGGTGGTGCTGAAGTCCAAGTTCTCAGCTGGTCAGTTCTGGGAGG
ACTGCCAGCAGCATAGGGTGACGGTGTTCCAGTACATTGGGGAGTTATGCCGATACCTTG
TCAACCAGCCCCCGAACCAGGCAGAGCATGGACATAAGGTCCGGATGGCGGTGGGCAGCG
GGCTGCGGCCGGACACCTGGGAGCGTTTTGTGCGGCGCTTCGGGCCCCTGCGGGTGCTGG
AGACCTACGGACTGACAGAGGGCAACGTGGCCACTTTCAACTACACAGGCCAGCGGGGAG
CTGTGGGGCGCGCTTCCTGGCTGTACAAGCATGTCTTCCCCTTCTCTTTGATTCGCTATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55665471|emb|CAH71421.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55665471|emb|CAH71421.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-211, gnl|bosTau2|chr3 (7995019-7995229)
               

               
               1-211, gnl|Hg17|chr1 (150562067-150562277)
               

               
               1-211, gnl|Mm7|chr3 (90519634-90519424)
               


               
               484-689, gnl|bosTau2|chr3 (7996664-7996869)
               

               
               484-689, gnl|Hg17|chr1 (150563699-150563904)
               

               
               484-689, gnl|Mm7|chr3 (90518194-90517990)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-211, gnl|bosTau2|chr3 (7995019-7995229)
               

               
               1-211, gnl|Hg17|chr1 (150562067-150562277)
               

               
               1-211, gnl|Mm7|chr3 (90519634-90519424)
               


               
               484-689, gnl|bosTau2|chr3 (7996664-7996869)
               

               
               484-689, gnl|Hg17|chr1 (150563699-150563904)
               

               
               484-689, gnl|Mm7|chr3 (90518194-90517990)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               elu (0.385356)
               

               
               eep (0.245128)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               eep (0.245128)

	1-211, gnl\|bosTau2\|chr3 (7995019-7995229)
	1-211, gnl\|Hg17\|chr1 (150562067-150562277)
	1-211, gnl\|Mm7\|chr3 (90519634-90519424)

	484-689, gnl\|bosTau2\|chr3 (7996664-7996869)
	484-689, gnl\|Hg17\|chr1 (150563699-150563904)
	484-689, gnl\|Mm7\|chr3 (90518194-90517990)