Ss1.1-Pig2-92E13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCAGGCCATTCATCAAAGCAGACTCAGGAGCAACAGAACCAGAACGAGGAAACTCACA GCTTTTTGCTTGCTGCAGAATACAAGGGAAACATTCTTTTCACAGTTATCTCTCAAGAAT TCATCCTTTTGTGATTCCATGGATATAACTGAAATTCTGCTTTTGTTCCTACCAATTTGA CATCACACATGGCTACTGATGGCAATGATCTTCAGGTTCCCTTGCGTCGGAAGCAGAGAA AGAAAACTCAAGGTCTTTTCAGCATGAGTCGGAGGAGGATATCATGTAAAGACCTCGGGC ATGCCGACTGCCAAGGGTGGCTGTATAAGAAAAAGGAAAAGGGAACTTTCCTGGGCAACA AATGGAAAAAGTTCTGGGTGGTGCTGAAGGGATCGTCACTGTACTGGTACAGCAATCAGT TGGCAGAGAAAGCTGATGGATTTGTCAACCTGCCTGATTTCACTGTAGAGAGGGCGTCTG AATGCAAGAAAAAGCATGCTTTTAAGATCAGCCATCCACAGATCAAGACCTTTTATTTTG CAGCTGAGAATGTGCAGGAAATGAACCTGTGGTTAAGCAAGTTTGGATTAGCTGTAGTCC ATCCTGAGTCCACTACAAAGGATGAAGAATGCTACAGCGAGAGTGAGCAGGAAGATCCTG AGATAGCGGCGGAGACTGCACCCCCTCCCTGCGCTGAGGAGTCTCTGCTTCCTCTGGCTG CTCAGCAGGCATCTTCATCTTCACCCAAACTGAGTGGAACAGCGCGTTCTTTATCCTCCA CAGAAACCTCAAGAAAGACATCCAGCACTTTGTCTTCCTCGTTGTCGAGAGGAAGACAGT CCTGGATCGACGTGATCAATAGTTCGTCTGCCGCTGAAGATGGGGCACGATCGGTGATGT GCGCTGTGCAGGCCCACTCACCTGTGCCCTCAGAGGCAAACAGCCTCGGGGCCCTGGAAA ACAGCTTTGCCACATCAGAGAGTGACTTCGTGAACTCTTTATCTAGTGATGACACTTCTT CATTGAATAGCAATCAAGATCATTTTAGTGGCCCAGAGAAGCCTGCTGGACCAAAGATGA TGGACGGAGAAGAGACAAAAGTGTCTGAGGATGATGAAATGGAGAAGCTCTACAAATCTT TAGAGCAAGCCAGTCTGTCTCCTCTTGGGGACCGGCGACCTTCAACCAAAAAGGAGCTGA GGAAGTCCTTTGTGAAGCGGTGCAAAAATCCATCCATAAATGAGAAACTCCACAAGATCC GAACTTTGAATAGCACATTAAAGTGTAAAGAACACGACCTGGCCATGATTAACCAGTTGC TGGATGATCCGAAGCTGACAGCCACAAAATACAGGGAATGGAAGGTCATGAACACGATGT TGATCCAGGATATCTATCAGCAGCGGCAGGTCTCTTCGTCTGCTCCCGAAACCTCCCCCC AGGGACTCGAGAGACCACCTTCCTCTACCTGCGTTGAAAATTCTATGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCAGGCCATTCATCAAAGCAGACTCAGGAGCAACAGAACCAGAACGAGGAAACTCACA GCTTTTTGCTTGCTGCAGAATACAAGGGAAACATTCTTTTCACAGTTATCTCTCAAGAAT TCATCCTTTTGTGATTCCATGGATATAACTGAAATTCTGCTTTTGTTCCTACCAATTTGA CATCACACATGGCTACTGATGGCAATGATCTTCAGGTTCCCTTGCGTCGGAAGCAGAGAA AGAAAACTCAAGGTCTTTTCAGCATGAGTCGGAGGAGGATATCATGTAAAGACCTCGGGC ATGCCGACTGCCAAGGGTGGCTGTATAAGAAAAAGGAAAAGGGAACTTTCCTGGGCAACA AATGGAAAAAGTTCTGGGTGGTGCTGAAGGGATCGTCACTGTACTGGTACAGCAATCAGT TGGCAGAGAAAGCTGATGGATTTGTCAACCTGCCTGATTTCACTGTAGAGAGGGCGTCTG AATGCAAGAAAAAGCATGCTTTTAAGATCAGCCATCCACAGATCAAGACCTTTTATTTTG CAGCTGAGAATGTGCAGGAAATGAACCTGTGGTTAAGCAAGTTTGGATTAGCTGTAGTCC ATCCTGAGTCCACTACAAAGGATGAAGAATGCTACAGCGAGAGTGAGCAGGAAGATCCTG AGATAGCGGCGGAGACTGCACCCCCTCCCTGCGCTGAGGAGTCTCTGCTTCCTCTGGCTG CTCAGCAGGCATCTTCATCTTCACCCAAACTGAGTGGAACAGCGCGTTCTTTATCCTCCA CAGAAACCTCAAGAAAGACATCCAGCACTTTGTCTTCCTCGTTGTCGAGAGGAAGACAGT CCTGGATCGACGTGATCAATAGTTCGTCTGCCGCTGAAGATGGGGCACGATCGGTGATGT GCGCTGTGCAGGCCCACTCACCTGTGCCCTCAGAGGCAAACAGCCTCGGGGCCCTGGAAA ACAGCTTTGCCACATCAGAGAGTGACTTCGTGAACTCTTTATCTAGTGATGACACTTCTT CATTGAATAGCAATCAAGATCATTTTAGTGGCCCAGAGAAGCCTGCTGGACCAAAGATGA TGGACGGAGAAGAGACAAAAGTGTCTGAGGATGATGAAATGGAGAAGCTCTACAAATCTT TAGAGCAAGCCAGTCTGTCTCCTCTTGGGGACCGGCGACCTTCAACCAAAAAGGAGCTGA GGAAGTCCTTTGTGAAGCGGTGCAAAAATCCATCCATAAATGAGAAACTCCACAAGATCC GAACTTTGAATAGCACATTAAAGTGTAAAGAACACGACCTGGCCATGATTAACCAGTTGC TGGATGATCCGAAGCTGACAGCCACAAAATACAGGGAATGGAAGGTCATGAACACGATGT TGATCCAGGATATCTATCAGCAGCGGCAGGTCTCTTCGTCTGCTCCCGAAACCTCCCCCC AGGGACTCGAGAGACCACCTTCCTCTACCTGCGTTGAAAATTCTATGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 251-369, - strand, RNAz p=0.651713 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 251-369, - strand, RNAz p=0.651713 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 251-423, gnl|bosTau2|chr9 (54904537-54904709) | |
| 251-423, gnl|canFam2|chr1 (47186028-47186194) | |
| 251-423, gnl|danRer3|chr17 (9729845-9729679) | |
| 251-423, gnl|dasNov1|scaffold_11717 (57781-57615) | |
| 251-423, gnl|echTel1|scaffold_313722 (37703-37535) | |
| 251-423, gnl|fr1|chrUn (225736182-225736343) | |
| 251-423, gnl|galGal2|chr3 (49062176-49062342) | |
| 251-423, gnl|hg17|chr6 (154659832-154659998) | |
| 251-423, gnl|Hg17|chr6 (154660009-154659837) | |
| 251-423, gnl|loxAfr1|scaffold_7473 (45819-45653) | |
| 251-423, gnl|mm7|chr10 (3367035-3366869) | |
| 251-423, gnl|Mm7|chr10 (3366856-3367028) | |
| 251-423, gnl|monDom2|scaffold_0 (50646843-50646677) | |
| 251-423, gnl|oryCun1|scaffold_167567 (7445-7611) | |
| 251-423, gnl|panTro1|chr5 (158217291-158217457) | |
| 251-423, gnl|rheMac2|chr4 (108721330-108721164) | |
| 251-423, gnl|rn3|chr1 (37713081-37713247) | |
| 251-423, gnl|tetNig1|chr10 (2685215-2685381) | |
| 716-1089, gnl|bosTau2|chr9 (54954303-54954676) | |
| 716-1089, gnl|canFam2|chr1 (47145085-47145472) | |
| 716-1089, gnl|dasNov1|scaffold_153 (218195-218595) | |
| 716-1089, gnl|echTel1|scaffold_306492 (11113-10715) | |
| 716-1089, gnl|hg17|chr6 (154612911-154613316) | |
| 716-1089, gnl|Hg17|chr6 (154613288-154612915) | |
| 716-1089, gnl|loxAfr1|scaffold_535 (25023-24625) | |
| 716-1089, gnl|mm7|chr10 (3426833-3426424) | |
| 716-1089, gnl|Mm7|chr10 (3426454-3426827) | |
| 716-1089, gnl|monDom2|scaffold_0 (50713363-50712964) | |
| 716-1089, gnl|oryCun1|scaffold_101306 (1707-1302) | |
| 716-1089, gnl|panTro1|chr5 (158170338-158170743) | |
| 716-1089, gnl|rheMac2|chr4 (108769017-108768604) | |
| 716-1089, gnl|rn3|chr1 (37667462-37667871) | |
| 1282-1486, gnl|bosTau2|chr9 (54975101-54975305) | |
| 1282-1486, gnl|Hg17|chr6 (154573290-154573080) | |
| 1282-1486, gnl|Mm7|chr10 (3455864-3456062) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 251-423, gnl|bosTau2|chr9 (54904537-54904709) | |
| 251-423, gnl|canFam2|chr1 (47186028-47186194) | |
| 251-423, gnl|danRer3|chr17 (9729845-9729679) | |
| 251-423, gnl|dasNov1|scaffold_11717 (57781-57615) | |
| 251-423, gnl|echTel1|scaffold_313722 (37703-37535) | |
| 251-423, gnl|fr1|chrUn (225736182-225736343) | |
| 251-423, gnl|galGal2|chr3 (49062176-49062342) | |
| 251-423, gnl|hg17|chr6 (154659832-154659998) | |
| 251-423, gnl|Hg17|chr6 (154660009-154659837) | |
| 251-423, gnl|loxAfr1|scaffold_7473 (45819-45653) | |
| 251-423, gnl|mm7|chr10 (3367035-3366869) | |
| 251-423, gnl|Mm7|chr10 (3366856-3367028) | |
| 251-423, gnl|monDom2|scaffold_0 (50646843-50646677) | |
| 251-423, gnl|oryCun1|scaffold_167567 (7445-7611) | |
| 251-423, gnl|panTro1|chr5 (158217291-158217457) | |
| 251-423, gnl|rheMac2|chr4 (108721330-108721164) | |
| 251-423, gnl|rn3|chr1 (37713081-37713247) | |
| 251-423, gnl|tetNig1|chr10 (2685215-2685381) | |
| 716-1089, gnl|bosTau2|chr9 (54954303-54954676) | |
| 716-1089, gnl|canFam2|chr1 (47145085-47145472) | |
| 716-1089, gnl|dasNov1|scaffold_153 (218195-218595) | |
| 716-1089, gnl|echTel1|scaffold_306492 (11113-10715) | |
| 716-1089, gnl|hg17|chr6 (154612911-154613316) | |
| 716-1089, gnl|Hg17|chr6 (154613288-154612915) | |
| 716-1089, gnl|loxAfr1|scaffold_535 (25023-24625) | |
| 716-1089, gnl|mm7|chr10 (3426833-3426424) | |
| 716-1089, gnl|Mm7|chr10 (3426454-3426827) | |
| 716-1089, gnl|monDom2|scaffold_0 (50713363-50712964) | |
| 716-1089, gnl|oryCun1|scaffold_101306 (1707-1302) | |
| 716-1089, gnl|panTro1|chr5 (158170338-158170743) | |
| 716-1089, gnl|rheMac2|chr4 (108769017-108768604) | |
| 716-1089, gnl|rn3|chr1 (37667462-37667871) | |
| 1282-1486, gnl|bosTau2|chr9 (54975101-54975305) | |
| 1282-1486, gnl|Hg17|chr6 (154573290-154573080) | |
| 1282-1486, gnl|Mm7|chr10 (3455864-3456062) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |