Non-Coding RNA Search

Ss1.1-Pig2-92J05.5

Sequence:


               
               CTGGATGAGCGGAGCAAGGAGTATTCCATTGCCGGGGACGATGCTGTGACAGAGGGGGTC
ACAGACCTTGTGCGAGGGACCCTCTGCCCGGCCCTTAAGGCCCTGTTTGAACACGGGCTG
AAGAAGCCTTCCCTGCTCGGGGGCGCCTGCCACCCCTGGCTCTTTATCGAGGAGGCAGCG
GGCCGGGAGGTCGAGAGAGACTTCGACTCCGTGTATTCGCGCCTGGTGCTGTGTAAGACG
TACAGGTTGGATGAAGACGGCAAAGTCCTCACCCCGGAGGAGCTGCTCTACCGGGCTGTG
CAGTCGGTCAACGTGACCCATGATGCTGCACACGCACAAATGGACGTCAAGCTCCGCTCT
CTCATCTGCGTGGGTCTCAACGAGCAGGTGCTGCACCTGTGGCTGGAGGTGCTCTGTTCC
AGCCTGGCGACTGTGGAGAAGTGGTACCAGCCCTGGTCCTTCCTGCGCAGCCCCGGTTGG
GTCCAGATCAAGTGCGAGCTGCGCGTCCTCTGCTGCTTTGCCTTCAGCCTCTCCCAGGAC
TGGGAGCTTCCTGCCAGGAGAGAGGAGGAGAAGAAGCCCCTGAAGGAGGGTGTCCAGGAC
ATGCTGGTGAAGCACCACCTCTTCAGCTGGGACATAGACGGGTGACGCTCTTCCTCCGGG
GACCCCCATCACACCCAGGCCTCCTCCAACCCCTTGGCTACTGGCGCCCCTTCCCCAAGC
GAGATGAGAACAGCTGGGCCCTGGCCAGTCTCCGGCCCATTTTGGGGTGGGGTCTGAGGT
GGCCCAGGCGCCCCCCTCCCCCCAGCTGCAGGGTCAAAGGGAGGACGAGCTCGGGGAGCC
CTGGCTGGACTCCATGGTGGGAGTCTGGGGACACGGCCCTGGGCACCCAGTGCTGTTGGG
CGGCGGGAGCAGGTGGGGGCGGGCTCGGCCCTGGGCCATTGCTCACTGTGCCCAATGAAA
ACCTTGGGGTGGTGGAGCCCCCTCTCTGTTCTGTCAGTTCTGCTCAGGAAGGGGATAGGC
GGGTAAAGGCTCCCTGGCCTCTTTGATTTATAAATAAACTGTCTTTGAGAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGATGAGCGGAGCAAGGAGTATTCCATTGCCGGGGACGATGCTGTGACAGAGGGGGTC
ACAGACCTTGTGCGAGGGACCCTCTGCCCGGCCCTTAAGGCCCTGTTTGAACACGGGCTG
AAGAAGCCTTCCCTGCTCGGGGGCGCCTGCCACCCCTGGCTCTTTATCGAGGAGGCAGCG
GGCCGGGAGGTCGAGAGAGACTTCGACTCCGTGTATTCGCGCCTGGTGCTGTGTAAGACG
TACAGGTTGGATGAAGACGGCAAAGTCCTCACCCCGGAGGAGCTGCTCTACCGGGCTGTG
CAGTCGGTCAACGTGACCCATGATGCTGCACACGCACAAATGGACGTCAAGCTCCGCTCT
CTCATCTGCGTGGGTCTCAACGAGCAGGTGCTGCACCTGTGGCTGGAGGTGCTCTGTTCC
AGCCTGGCGACTGTGGAGAAGTGGTACCAGCCCTGGTCCTTCCTGCGCAGCCCCGGTTGG
GTCCAGATCAAGTGCGAGCTGCGCGTCCTCTGCTGCTTTGCCTTCAGCCTCTCCCAGGAC
TGGGAGCTTCCTGCCAGGAGAGAGGAGGAGAAGAAGCCCCTGAAGGAGGGTGTCCAGGAC
ATGCTGGTGAAGCACCACCTCTTCAGCTGGGACATAGACGGGTGACGCTCTTCCTCCGGG
GACCCCCATCACACCCAGGCCTCCTCCAACCCCTTGGCTACTGGCGCCCCTTCCCCAAGC
GAGATGAGAACAGCTGGGCCCTGGCCAGTCTCCGGCCCATTTTGGGGTGGGGTCTGAGGT
GGCCCAGGCGCCCCCCTCCCCCCAGCTGCAGGGTCAAAGGGAGGACGAGCTCGGGGAGCC
CTGGCTGGACTCCATGGTGGGAGTCTGGGGACACGGCCCTGGGCACCCAGTGCTGTTGGG
CGGCGGGAGCAGGTGGGGGCGGGCTCGGCCCTGGGCCATTGCTCACTGTGCCCAATGAAA
ACCTTGGGGTGGTGGAGCCCCCTCTCTGTTCTGTCAGTTCTGCTCAGGAAGGGGATAGGC
GGGTAAAGGCTCCCTGGCCTCTTTGATTTATAAATAAACTGTCTTTGAGAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|6808143|emb|CAB70773.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6808143|emb|CAB70773.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               381-503, + strand, RNAz p=0.902795
               

               
               381-481, + strand, RNAz p=0.51814

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               381-503, + strand, RNAz p=0.902795
               

               
               381-481, + strand, RNAz p=0.51814

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               20-175, gnl|bosTau2|chr5 (70086673-70086518)
               

               
               20-175, gnl|Hg17|chr22 (39128779-39128934)
               

               
               20-175, gnl|Mm7|chr15 (81094889-81095044)
               


               
               381-503, gnl|bosTau2|chr5 (70085509-70085387)
               

               
               381-503, gnl|canFam2|chr10 (27826002-27825901)
               

               
               381-503, gnl|danRer3|chr3 (32250944-32251032)
               

               
               381-503, gnl|dasNov1|scaffold_37493 (7092-7177)
               

               
               381-503, gnl|echTel1|scaffold_239527 (983-882)
               

               
               381-503, gnl|fr1|chrUn (157658285-157658380)
               

               
               381-503, gnl|galGal2|chr1 (46779890-46779787)
               

               
               381-503, gnl|hg17|chr22 (39129738-39129840)
               

               
               381-503, gnl|Hg17|chr22 (39129754-39129876)
               

               
               381-503, gnl|loxAfr1|scaffold_83950 (6837-6938)
               

               
               381-503, gnl|mm7|chr15 (81095704-81095805)
               

               
               381-503, gnl|Mm7|chr15 (81095719-81095841)
               

               
               381-503, gnl|panTro1|chr23 (39384651-39384753)
               

               
               381-503, gnl|rn3|chr7 (119339309-119339410)
               

               
               381-503, gnl|tetNig1|chr3 (8312434-8312529)
               

               
               381-503, gnl|xenTro1|scaffold_246 (143425-143526)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-175, gnl|bosTau2|chr5 (70086673-70086518)
               

               
               20-175, gnl|Hg17|chr22 (39128779-39128934)
               

               
               20-175, gnl|Mm7|chr15 (81094889-81095044)
               


               
               381-503, gnl|bosTau2|chr5 (70085509-70085387)
               

               
               381-503, gnl|canFam2|chr10 (27826002-27825901)
               

               
               381-503, gnl|danRer3|chr3 (32250944-32251032)
               

               
               381-503, gnl|dasNov1|scaffold_37493 (7092-7177)
               

               
               381-503, gnl|echTel1|scaffold_239527 (983-882)
               

               
               381-503, gnl|fr1|chrUn (157658285-157658380)
               

               
               381-503, gnl|galGal2|chr1 (46779890-46779787)
               

               
               381-503, gnl|hg17|chr22 (39129738-39129840)
               

               
               381-503, gnl|Hg17|chr22 (39129754-39129876)
               

               
               381-503, gnl|loxAfr1|scaffold_83950 (6837-6938)
               

               
               381-503, gnl|mm7|chr15 (81095704-81095805)
               

               
               381-503, gnl|Mm7|chr15 (81095719-81095841)
               

               
               381-503, gnl|panTro1|chr23 (39384651-39384753)
               

               
               381-503, gnl|rn3|chr7 (119339309-119339410)
               

               
               381-503, gnl|tetNig1|chr3 (8312434-8312529)
               

               
               381-503, gnl|xenTro1|scaffold_246 (143425-143526)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ill (0.175593)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	381-503, + strand, RNAz p=0.902795
	381-481, + strand, RNAz p=0.51814

	20-175, gnl\|bosTau2\|chr5 (70086673-70086518)
	20-175, gnl\|Hg17\|chr22 (39128779-39128934)
	20-175, gnl\|Mm7\|chr15 (81094889-81095044)

	381-503, gnl\|bosTau2\|chr5 (70085509-70085387)
	381-503, gnl\|canFam2\|chr10 (27826002-27825901)
	381-503, gnl\|danRer3\|chr3 (32250944-32251032)
	381-503, gnl\|dasNov1\|scaffold_37493 (7092-7177)
	381-503, gnl\|echTel1\|scaffold_239527 (983-882)
	381-503, gnl\|fr1\|chrUn (157658285-157658380)
	381-503, gnl\|galGal2\|chr1 (46779890-46779787)
	381-503, gnl\|hg17\|chr22 (39129738-39129840)
	381-503, gnl\|Hg17\|chr22 (39129754-39129876)
	381-503, gnl\|loxAfr1\|scaffold_83950 (6837-6938)
	381-503, gnl\|mm7\|chr15 (81095704-81095805)
	381-503, gnl\|Mm7\|chr15 (81095719-81095841)
	381-503, gnl\|panTro1\|chr23 (39384651-39384753)
	381-503, gnl\|rn3\|chr7 (119339309-119339410)
	381-503, gnl\|tetNig1\|chr3 (8312434-8312529)
	381-503, gnl\|xenTro1\|scaffold_246 (143425-143526)

	ill (0.175593)
	csp (0.161186)
	hyp (0.142837)
	nca (0.136874)
	ebs (0.118301)
	ecc (0.115035)