Ss1.1-Pig2-93E04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTAAGGCTGCCCCGGGAGACTGACGAGGAGCCTGAGGAGTCCAGCCGGAAGGGCAACT TTGTGGAGATGGTGGACAACCTGAGGGGCAAGTCCGGTCAGGGCTACTACGTGGAGATGA CCGTGGGCAGCCCCCCACAGAGGCTCAACATCCTGGTGGACACAGGCAGCAGTAACTTTG CTGTGGGGGCTGCCCCCCACCCTTTCCTGCATCGCTACTACCAGAGGCAGCTGTCCAGCA CATACCGGGACCTCCGGAAGGGTGTGTATGTGCCCTACACCCAGGGCAAGTGGGAGGGGG AGCTGGGCACCGACCTGGTGAGCATCCCCCACGGCCCCAACGTCACTGTGCGGGCCAACA TTGCTGCCATCACTGAGTCAGACAAGTTCTTCATCAATGGCTCCAACTGGGAGGGCATCC TGGGGCTGGCCTACGCGGAGATCGCCAGGCCCGACGACTCCTTGGAGCCGTTCTTTGATT CCCTGGTAAAGCAGACCCACGTGCCCAACCTCTTCTCCCTGCAGCTCTGCGGCGCCGGCT TCCCCCTCAACCAGTCGGAAGTGCTGGCCTCGGTTGGTGGGAGCATGATCATCGGGGGTA TCGACCACTCGCTGTACACGGGCAGCCTCTGGTACACACCCATCCGGCGGGAGTGGTATT ATGAGGTGATCATTGTGCGGGTGGAGATCAATGGACAGGATCTGAAAATGGACTGCAAGG AGTACAACTACGACAAGAGCATTGTCGACAGTGGCACCACCAACCTTCGTTTGCCCAAGA AAGTGTTTGAAGCTGCCGTCAAATCCATCAAGGCAGCCTCCTCGACGGAGAAGTTCCCAG ATGGTTTCTGGTTAGGGGAACAGCTGGTGTGCTGGCAAGCAGGCACCACCCCTTGGAACA TTTTCCCAGTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTAAGGCTGCCCCGGGAGACTGACGAGGAGCCTGAGGAGTCCAGCCGGAAGGGCAACT TTGTGGAGATGGTGGACAACCTGAGGGGCAAGTCCGGTCAGGGCTACTACGTGGAGATGA CCGTGGGCAGCCCCCCACAGAGGCTCAACATCCTGGTGGACACAGGCAGCAGTAACTTTG CTGTGGGGGCTGCCCCCCACCCTTTCCTGCATCGCTACTACCAGAGGCAGCTGTCCAGCA CATACCGGGACCTCCGGAAGGGTGTGTATGTGCCCTACACCCAGGGCAAGTGGGAGGGGG AGCTGGGCACCGACCTGGTGAGCATCCCCCACGGCCCCAACGTCACTGTGCGGGCCAACA TTGCTGCCATCACTGAGTCAGACAAGTTCTTCATCAATGGCTCCAACTGGGAGGGCATCC TGGGGCTGGCCTACGCGGAGATCGCCAGGCCCGACGACTCCTTGGAGCCGTTCTTTGATT CCCTGGTAAAGCAGACCCACGTGCCCAACCTCTTCTCCCTGCAGCTCTGCGGCGCCGGCT TCCCCCTCAACCAGTCGGAAGTGCTGGCCTCGGTTGGTGGGAGCATGATCATCGGGGGTA TCGACCACTCGCTGTACACGGGCAGCCTCTGGTACACACCCATCCGGCGGGAGTGGTATT ATGAGGTGATCATTGTGCGGGTGGAGATCAATGGACAGGATCTGAAAATGGACTGCAAGG AGTACAACTACGACAAGAGCATTGTCGACAGTGGCACCACCAACCTTCGTTTGCCCAAGA AAGTGTTTGAAGCTGCCGTCAAATCCATCAAGGCAGCCTCCTCGACGGAGAAGTTCCCAG ATGGTTTCTGGTTAGGGGAACAGCTGGTGTGCTGGCAAGCAGGCACCACCCCTTGGAACA TTTTCCCAGTCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-157, gnl|bosTau2|chr15 (13585650-13585494) | |
| 1-157, gnl|Hg17|chr11 (116691603-116691447) | |
| 1-157, gnl|Mm7|chr9 (45797269-45797426) | |
| 233-449, gnl|bosTau2|chr15 (13568895-13568679) | |
| 233-449, gnl|canFam2|chr5 (19316543-19316310) | |
| 233-449, gnl|danRer3|chr5 (39140927-39140698) | |
| 233-449, gnl|dasNov1|scaffold_4916 (61199-61432) | |
| 233-449, gnl|echTel1|scaffold_300516 (13292-13525) | |
| 233-449, gnl|fr1|chrUn (188012867-188013099) | |
| 233-449, gnl|galGal2|chr24 (4935063-4935294) | |
| 233-449, gnl|hg17|chr11 (116671053-116671286) | |
| 233-449, gnl|Hg17|chr11 (116671273-116671057) | |
| 233-449, gnl|loxAfr1|scaffold_7234 (47728-47495) | |
| 233-449, gnl|mm7|chr9 (45812972-45812739) | |
| 233-449, gnl|Mm7|chr9 (45812750-45812966) | |
| 233-449, gnl|monDom2|scaffold_2 (121995826-121995593) | |
| 233-449, gnl|oryCun1|scaffold_91460 (4117-3884) | |
| 233-449, gnl|panTro1|chr9 (118673205-118673438) | |
| 233-449, gnl|rheMac2|chr14 (115696181-115696414) | |
| 233-449, gnl|rn3|chr8 (48842990-48842757) | |
| 233-449, gnl|tetNig1|chr16 (7982541-7982774) | |
| 233-449, gnl|xenTro1|scaffold_18 (1179314-1179081) | |
| 587-722, gnl|bosTau2|chr15 (13567379-13567244) | |
| 587-722, gnl|canFam2|chr5 (19318006-19317854) | |
| 587-722, gnl|danRer3|chr5 (39144190-39144039) | |
| 587-722, gnl|dasNov1|scaffold_4916 (59807-59959) | |
| 587-722, gnl|echTel1|scaffold_300516 (12062-12212) | |
| 587-722, gnl|fr1|chrUn (188012351-188012495) | |
| 587-722, gnl|galGal2|chr24 (4934347-4934500) | |
| 587-722, gnl|hg17|chr11 (116668974-116669126) | |
| 587-722, gnl|Hg17|chr11 (116669115-116668980) | |
| 587-722, gnl|mm7|chr9 (45815379-45815228) | |
| 587-722, gnl|Mm7|chr9 (45815236-45815371) | |
| 587-722, gnl|monDom2|scaffold_2 (121997448-121997296) | |
| 587-722, gnl|panTro1|chr9 (118671126-118671278) | |
| 587-722, gnl|rheMac2|chr14 (115694064-115694216) | |
| 587-722, gnl|rn3|chr8 (48845136-48844985) | |
| 587-722, gnl|tetNig1|chr16 (7982068-7982211) | |
| 587-722, gnl|xenTro1|scaffold_18 (1183468-1183321) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-157, gnl|bosTau2|chr15 (13585650-13585494) | |
| 1-157, gnl|Hg17|chr11 (116691603-116691447) | |
| 1-157, gnl|Mm7|chr9 (45797269-45797426) | |
| 233-449, gnl|bosTau2|chr15 (13568895-13568679) | |
| 233-449, gnl|canFam2|chr5 (19316543-19316310) | |
| 233-449, gnl|danRer3|chr5 (39140927-39140698) | |
| 233-449, gnl|dasNov1|scaffold_4916 (61199-61432) | |
| 233-449, gnl|echTel1|scaffold_300516 (13292-13525) | |
| 233-449, gnl|fr1|chrUn (188012867-188013099) | |
| 233-449, gnl|galGal2|chr24 (4935063-4935294) | |
| 233-449, gnl|hg17|chr11 (116671053-116671286) | |
| 233-449, gnl|Hg17|chr11 (116671273-116671057) | |
| 233-449, gnl|loxAfr1|scaffold_7234 (47728-47495) | |
| 233-449, gnl|mm7|chr9 (45812972-45812739) | |
| 233-449, gnl|Mm7|chr9 (45812750-45812966) | |
| 233-449, gnl|monDom2|scaffold_2 (121995826-121995593) | |
| 233-449, gnl|oryCun1|scaffold_91460 (4117-3884) | |
| 233-449, gnl|panTro1|chr9 (118673205-118673438) | |
| 233-449, gnl|rheMac2|chr14 (115696181-115696414) | |
| 233-449, gnl|rn3|chr8 (48842990-48842757) | |
| 233-449, gnl|tetNig1|chr16 (7982541-7982774) | |
| 233-449, gnl|xenTro1|scaffold_18 (1179314-1179081) | |
| 587-722, gnl|bosTau2|chr15 (13567379-13567244) | |
| 587-722, gnl|canFam2|chr5 (19318006-19317854) | |
| 587-722, gnl|danRer3|chr5 (39144190-39144039) | |
| 587-722, gnl|dasNov1|scaffold_4916 (59807-59959) | |
| 587-722, gnl|echTel1|scaffold_300516 (12062-12212) | |
| 587-722, gnl|fr1|chrUn (188012351-188012495) | |
| 587-722, gnl|galGal2|chr24 (4934347-4934500) | |
| 587-722, gnl|hg17|chr11 (116668974-116669126) | |
| 587-722, gnl|Hg17|chr11 (116669115-116668980) | |
| 587-722, gnl|mm7|chr9 (45815379-45815228) | |
| 587-722, gnl|Mm7|chr9 (45815236-45815371) | |
| 587-722, gnl|monDom2|scaffold_2 (121997448-121997296) | |
| 587-722, gnl|panTro1|chr9 (118671126-118671278) | |
| 587-722, gnl|rheMac2|chr14 (115694064-115694216) | |
| 587-722, gnl|rn3|chr8 (48845136-48844985) | |
| 587-722, gnl|tetNig1|chr16 (7982068-7982211) | |
| 587-722, gnl|xenTro1|scaffold_18 (1183468-1183321) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) | |
| eje (0.0988338) |