Non-Coding RNA Search

Ss1.1-Pig2-93E24.5

Sequence:


               
               GCCAGGACGGGCCCACGTCTCCAGATGCATCCCTGGATGCTGTGGGCTGCAGCAGCCCCC
CTGCCCTGTCTTCTGAGAGCTTCCCTCTGCCTGCCTTGAGGACCCTTCCCCCTCCAGAGG
GGGACCCGGGCCTTCTGGGCCTCCCCTCCATGGCAGCCGAGGTGGGGGCCCAAAAAGAGC
ATCAGGCTGCCAAGAGGGCGTGCTGTGCCTGCACAGGGACGTCGGCCGAGGATCCACCCA
CACTTTCAGCTCCTGGAGGGTGGGGGCCAGCTGGAGGCCCTACCTGAGCCTCAGCCCCCG
CACCCTGTTACCCACCCTGCCTCCCACCACTACCATCACCCCCCGACCTCCTCCACTGCC
TCAAAGACTCTTGGGCCTCCTGAGAAAAAAGAAAACAGAAAAGTGGTTTTTTTTCTCTTT
TCTTTTTTGCCCCTTTCCCCCCACCCCCACCCACGGGGCCTCTTTTTGGAGGTGGGGGCT
GGGGAACAAGGGGCTGAGGTCCCGGAAGGGATTTTATTTTTGGAATTTTAATTGTTACAT
TTTTAAAAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAGGACGGGCCCACGTCTCCAGATGCATCCCTGGATGCTGTGGGCTGCAGCAGCCCCC
CTGCCCTGTCTTCTGAGAGCTTCCCTCTGCCTGCCTTGAGGACCCTTCCCCCTCCAGAGG
GGGACCCGGGCCTTCTGGGCCTCCCCTCCATGGCAGCCGAGGTGGGGGCCCAAAAAGAGC
ATCAGGCTGCCAAGAGGGCGTGCTGTGCCTGCACAGGGACGTCGGCCGAGGATCCACCCA
CACTTTCAGCTCCTGGAGGGTGGGGGCCAGCTGGAGGCCCTACCTGAGCCTCAGCCCCCG
CACCCTGTTACCCACCCTGCCTCCCACCACTACCATCACCCCCCGACCTCCTCCACTGCC
TCAAAGACTCTTGGGCCTCCTGAGAAAAAAGAAAACAGAAAAGTGGTTTTTTTTCTCTTT
TCTTTTTTGCCCCTTTCCCCCCACCCCCACCCACGGGGCCTCTTTTTGGAGGTGGGGGCT
GGGGAACAAGGGGCTGAGGTCCCGGAAGGGATTTTATTTTTGGAATTTTAATTGTTACAT
TTTTAAAAAAAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               77-196, - strand, RNAz p=0.536517
               

               
               236-348, + strand, RNAz p=0.998878

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-196, - strand, RNAz p=0.536517
               

               
               236-348, + strand, RNAz p=0.998878

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_006202, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_006202, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-372, gnl|bosTau2|chr7 (10844305-10844685)
               

               
               1-372, gnl|Hg17|chr19 (10439011-10439484)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-372, gnl|bosTau2|chr7 (10844305-10844685)
               

               
               1-372, gnl|Hg17|chr19 (10439011-10439484)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	77-196, - strand, RNAz p=0.536517
	236-348, + strand, RNAz p=0.998878

	1-372, gnl\|bosTau2\|chr7 (10844305-10844685)
	1-372, gnl\|Hg17\|chr19 (10439011-10439484)