Non-Coding RNA Search

Ss1.1-Pig2-93L13.5

Sequence:


               
               CTGTCCCCAAGTACTTCCCCAGTGTAGCTAGAAGGGAAGGAAGCTATATTAACTTGAGCT
TGGCTAAATCTTCTCTGAGTGGAGGACTTTATAGTTGCCCCACCTAAACTGCTCTCTAGA
GATCCTTTCCTGTTGGGTGTCATGTGGTGAGAGAGGGTCTGTGACTGTTTAACACAAAGG
AAAGCTGGCATTTCAGCACAAAGACATGACGTCAGCTGCTATTTGCCGATTCTCACTCCC
CTAAAGAAAATGACGGGAGCGGCAGAGCTGCTGGTTCTCAATGGTTCTTATTCTTGCCAC
AGCTGGTTGCCAAGGAGGACCCTAAAGCACTGGCTGTTGCTTTGAACTGGGACATAAGGA
AGACGGAAACGGTTCAACAGACCTGTGGTCAGGAGCTCAGCCTGCGCCTCCAGCAGATCC
AGAGCTTGCATTCTCTGAGGAGCCTCTCAGCAAGAAAGAACTCACTGCCCGGAGAAGCGC
AGAACCCCAAACGAGCCAAACGAGACCTCACATAGCCAGCAGCCGGAAAGACACCAAAGA
AAACTTGGGGTTTTGTTGTCAGTAAACACCTTCAGCCTAATTATCGTAGCTGCTTACATC
CTCCTCTGCCCCCTGCCTTTGAGAATGTTCTGGACCGGCTGGGAAGCTGGCTGCACGCCC
TCTTCAGATTCCAGATCTCCACCCAGGAGGTCTGTCTTGAACCACAGAGGCACCAGTGAT
AGCCCACCTCCCCGTGGCATGGTCTTACGTGCTCTGTTTAAAAGTAGCCGTAAAGGGCAG
TGTCAGGAAATTGTCATATTTCAGACTCACTATTCTTTTTTTTTTAATTCTACATCCAAC
AAATGGTATATACCTCTTTCATGGTTCATTCTGTTGAGCTACGCAGCCATCATAGTAGTA
GACCCACTATTCTTGTTCCAAAGGTAGAACCGTGAATTTTAAACACAAATCATGGTAGAG
AAGGCGACATAACAGAGGGTTGAGTATGGCTACAAAATTGTTTCTCAAGTTAATGAAATT
TTTCCTTTGTTTTAAGGCACATATTAAATTTGCAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTCCCCAAGTACTTCCCCAGTGTAGCTAGAAGGGAAGGAAGCTATATTAACTTGAGCT
TGGCTAAATCTTCTCTGAGTGGAGGACTTTATAGTTGCCCCACCTAAACTGCTCTCTAGA
GATCCTTTCCTGTTGGGTGTCATGTGGTGAGAGAGGGTCTGTGACTGTTTAACACAAAGG
AAAGCTGGCATTTCAGCACAAAGACATGACGTCAGCTGCTATTTGCCGATTCTCACTCCC
CTAAAGAAAATGACGGGAGCGGCAGAGCTGCTGGTTCTCAATGGTTCTTATTCTTGCCAC
AGCTGGTTGCCAAGGAGGACCCTAAAGCACTGGCTGTTGCTTTGAACTGGGACATAAGGA
AGACGGAAACGGTTCAACAGACCTGTGGTCAGGAGCTCAGCCTGCGCCTCCAGCAGATCC
AGAGCTTGCATTCTCTGAGGAGCCTCTCAGCAAGAAAGAACTCACTGCCCGGAGAAGCGC
AGAACCCCAAACGAGCCAAACGAGACCTCACATAGCCAGCAGCCGGAAAGACACCAAAGA
AAACTTGGGGTTTTGTTGTCAGTAAACACCTTCAGCCTAATTATCGTAGCTGCTTACATC
CTCCTCTGCCCCCTGCCTTTGAGAATGTTCTGGACCGGCTGGGAAGCTGGCTGCACGCCC
TCTTCAGATTCCAGATCTCCACCCAGGAGGTCTGTCTTGAACCACAGAGGCACCAGTGAT
AGCCCACCTCCCCGTGGCATGGTCTTACGTGCTCTGTTTAAAAGTAGCCGTAAAGGGCAG
TGTCAGGAAATTGTCATATTTCAGACTCACTATTCTTTTTTTTTTAATTCTACATCCAAC
AAATGGTATATACCTCTTTCATGGTTCATTCTGTTGAGCTACGCAGCCATCATAGTAGTA
GACCCACTATTCTTGTTCCAAAGGTAGAACCGTGAATTTTAAACACAAATCATGGTAGAG
AAGGCGACATAACAGAGGGTTGAGTATGGCTACAAAATTGTTTCTCAAGTTAATGAAATT
TTTCCTTTGTTTTAAGGCACATATTAAATTTGCAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|24158730|pdb|1IYR|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|24158730|pdb|1IYR|A

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-919, gnl|bosTau2|chr16 (31888410-31887516)
               

               
               1-919, gnl|Hg17|chr1 (10456909-10455540)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-919, gnl|bosTau2|chr16 (31888410-31887516)
               

               
               1-919, gnl|Hg17|chr1 (10456909-10455540)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)

	1-919, gnl\|bosTau2\|chr16 (31888410-31887516)
	1-919, gnl\|Hg17\|chr1 (10456909-10455540)

	fcc (0.197785)
	fbs (0.175346)
	sug (0.127291)
	ese (0.126502)
	pgl (0.118483)