Ss1.1-Pig2-96D14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATGGACACCAGGGGCTGCTGACCTTGTGGCCACAGTCACCCATGTCCTCCAGAACCACC CAGAAAGATTCATACCAGCCCCCAGGAAACCACTCTCAGCCAGTCCGAGGGAAGCGTGAA GCCATGCTGGAGATGTTCTTGCGCCACCAGATCTGTAAAGAGGTGCAGGCAGAGCAGGAA GCCACAAGGAAGGACTCTGAGGTCGAGTCTGTGACACATCATGACTACAGAAAGGAGCTG GTGCATGCAGGGCCTCCTACTCCAACAAGGCCTCATGACTACCGTACTGAGCAGCCTGAA ACCTTCTGGATACAGAGGGCACCGCAGCTACCGGGCGTCAGTAACATCAGGACGCTGGAC ACGCCATTCAGGAAGAACTGCAGCTTCTCAACACCAGTGCCTTTGTCTCTAGGGCAGCCT TTGCCCTATGAACCTGAGGATTATTCCCACTAATTGGGAGAAATATCCTCCCCTGCCTGT CAGGGAGGAGGGCGGGGTGGTGGAGGGGATAGAACCACTCCAGTCTAAGGGTTGAGGAGG GCAGCAGATGTGGATTAAAGAATCTGTCTGAATTCTGTCTGTACTTGGAGAAGAGGCTTT CCATAAAAAGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATGGACACCAGGGGCTGCTGACCTTGTGGCCACAGTCACCCATGTCCTCCAGAACCACC CAGAAAGATTCATACCAGCCCCCAGGAAACCACTCTCAGCCAGTCCGAGGGAAGCGTGAA GCCATGCTGGAGATGTTCTTGCGCCACCAGATCTGTAAAGAGGTGCAGGCAGAGCAGGAA GCCACAAGGAAGGACTCTGAGGTCGAGTCTGTGACACATCATGACTACAGAAAGGAGCTG GTGCATGCAGGGCCTCCTACTCCAACAAGGCCTCATGACTACCGTACTGAGCAGCCTGAA ACCTTCTGGATACAGAGGGCACCGCAGCTACCGGGCGTCAGTAACATCAGGACGCTGGAC ACGCCATTCAGGAAGAACTGCAGCTTCTCAACACCAGTGCCTTTGTCTCTAGGGCAGCCT TTGCCCTATGAACCTGAGGATTATTCCCACTAATTGGGAGAAATATCCTCCCCTGCCTGT CAGGGAGGAGGGCGGGGTGGTGGAGGGGATAGAACCACTCCAGTCTAAGGGTTGAGGAGG GCAGCAGATGTGGATTAAAGAATCTGTCTGAATTCTGTCTGTACTTGGAGAAGAGGCTTT CCATAAAAAGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 362-472, + strand, RNAz p=0.917609 | |
| 408-527, + strand, RNAz p=0.868751 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 362-472, + strand, RNAz p=0.917609 | |
| 408-527, + strand, RNAz p=0.868751 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_012436, + |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-110, gnl|bosTau2|chr8 (28541108-28540999) | |
| 1-110, gnl|canFam2|chr11 (55368924-55369426) | |
| 1-110, gnl|dasNov1|scaffold_1119 (91320-90817) | |
| 1-110, gnl|echTel1|scaffold_240573 (4278-4810) | |
| 1-110, gnl|hg17|chr9 (35800523-35801026) | |
| 1-110, gnl|Hg17|chr9 (35800988-35800879) | |
| 1-110, gnl|loxAfr1|scaffold_138731 (4249-3738) | |
| 1-110, gnl|mm7|chr4 (43665829-43666305) | |
| 1-110, gnl|Mm7|chr4 (43666267-43666158) | |
| 1-110, gnl|monDom2|scaffold_17 (45722039-45721568) | |
| 1-110, gnl|oryCun1|scaffold_184457 (3723-3229) | |
| 1-110, gnl|panTro1|chr11 (36359788-36360292) | |
| 1-110, gnl|rheMac2|chr15 (41712944-41712439) | |
| 1-110, gnl|rn3|chr5 (60128920-60129395) | |
| 155-268, gnl|bosTau2|chr8 (28540682-28540569) | |
| 155-268, gnl|canFam2|chr11 (55368825-55368923) | |
| 155-268, gnl|dasNov1|scaffold_1119 (91413-91321) | |
| 155-268, gnl|echTel1|scaffold_240573 (4179-4277) | |
| 155-268, gnl|hg17|chr9 (35800424-35800522) | |
| 155-268, gnl|Hg17|chr9 (35800551-35800438) | |
| 155-268, gnl|loxAfr1|scaffold_138731 (4347-4250) | |
| 155-268, gnl|mm7|chr4 (43665732-43665828) | |
| 155-268, gnl|Mm7|chr4 (43665857-43665744) | |
| 155-268, gnl|monDom2|scaffold_17 (45722132-45722040) | |
| 155-268, gnl|oryCun1|scaffold_184457 (3822-3724) | |
| 155-268, gnl|panTro1|chr11 (36359689-36359787) | |
| 155-268, gnl|rn3|chr5 (60128823-60128919) | |
| 328-565, gnl|bosTau2|chr8 (28540271-28540037) | |
| 328-565, gnl|canFam2|chr11 (55368148-55368824) | |
| 328-565, gnl|dasNov1|scaffold_1119 (92136-91414) | |
| 328-565, gnl|echTel1|scaffold_240573 (3508-4178) | |
| 328-565, gnl|hg17|chr9 (35799722-35800423) | |
| 328-565, gnl|Hg17|chr9 (35800135-35799897) | |
| 328-565, gnl|loxAfr1|scaffold_138731 (5034-4348) | |
| 328-565, gnl|mm7|chr4 (43665063-43665731) | |
| 328-565, gnl|Mm7|chr4 (43665474-43665237) | |
| 328-565, gnl|monDom2|scaffold_17 (45722743-45722133) | |
| 328-565, gnl|oryCun1|scaffold_184457 (4456-3823) | |
| 328-565, gnl|panTro1|chr11 (36358987-36359688) | |
| 328-565, gnl|rheMac2|chr15 (41713804-41713108) | |
| 328-565, gnl|rn3|chr5 (60128154-60128822) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-110, gnl|bosTau2|chr8 (28541108-28540999) | |
| 1-110, gnl|canFam2|chr11 (55368924-55369426) | |
| 1-110, gnl|dasNov1|scaffold_1119 (91320-90817) | |
| 1-110, gnl|echTel1|scaffold_240573 (4278-4810) | |
| 1-110, gnl|hg17|chr9 (35800523-35801026) | |
| 1-110, gnl|Hg17|chr9 (35800988-35800879) | |
| 1-110, gnl|loxAfr1|scaffold_138731 (4249-3738) | |
| 1-110, gnl|mm7|chr4 (43665829-43666305) | |
| 1-110, gnl|Mm7|chr4 (43666267-43666158) | |
| 1-110, gnl|monDom2|scaffold_17 (45722039-45721568) | |
| 1-110, gnl|oryCun1|scaffold_184457 (3723-3229) | |
| 1-110, gnl|panTro1|chr11 (36359788-36360292) | |
| 1-110, gnl|rheMac2|chr15 (41712944-41712439) | |
| 1-110, gnl|rn3|chr5 (60128920-60129395) | |
| 155-268, gnl|bosTau2|chr8 (28540682-28540569) | |
| 155-268, gnl|canFam2|chr11 (55368825-55368923) | |
| 155-268, gnl|dasNov1|scaffold_1119 (91413-91321) | |
| 155-268, gnl|echTel1|scaffold_240573 (4179-4277) | |
| 155-268, gnl|hg17|chr9 (35800424-35800522) | |
| 155-268, gnl|Hg17|chr9 (35800551-35800438) | |
| 155-268, gnl|loxAfr1|scaffold_138731 (4347-4250) | |
| 155-268, gnl|mm7|chr4 (43665732-43665828) | |
| 155-268, gnl|Mm7|chr4 (43665857-43665744) | |
| 155-268, gnl|monDom2|scaffold_17 (45722132-45722040) | |
| 155-268, gnl|oryCun1|scaffold_184457 (3822-3724) | |
| 155-268, gnl|panTro1|chr11 (36359689-36359787) | |
| 155-268, gnl|rn3|chr5 (60128823-60128919) | |
| 328-565, gnl|bosTau2|chr8 (28540271-28540037) | |
| 328-565, gnl|canFam2|chr11 (55368148-55368824) | |
| 328-565, gnl|dasNov1|scaffold_1119 (92136-91414) | |
| 328-565, gnl|echTel1|scaffold_240573 (3508-4178) | |
| 328-565, gnl|hg17|chr9 (35799722-35800423) | |
| 328-565, gnl|Hg17|chr9 (35800135-35799897) | |
| 328-565, gnl|loxAfr1|scaffold_138731 (5034-4348) | |
| 328-565, gnl|mm7|chr4 (43665063-43665731) | |
| 328-565, gnl|Mm7|chr4 (43665474-43665237) | |
| 328-565, gnl|monDom2|scaffold_17 (45722743-45722133) | |
| 328-565, gnl|oryCun1|scaffold_184457 (4456-3823) | |
| 328-565, gnl|panTro1|chr11 (36358987-36359688) | |
| 328-565, gnl|rheMac2|chr15 (41713804-41713108) | |
| 328-565, gnl|rn3|chr5 (60128154-60128822) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eli (0.151814) |