Non-Coding RNA Search

Ss1.1-Pig2-97I12.5

Sequence:


               
               GCTTCGGCTGGATGGACATGACCATCCACAAAGGCAAGCGCTGGAGCACGGCTTGTGCAT
ACCTGCACCCAGCACTGAGTCGCCCCAACCTCACAGCTGAGGCCCAGACGCTTGTGAGTA
GGGTGCTATTTGAAGGCACCCGTGCAGTAGGTGTGGAGTATATCAAGAATGGCCAGAGCC
ACAGGGCTTATGCCAGCAAGGAGGTGATTCTGAGTGGAGGTGTCATCAACTCTCCACAGC
TGCTCATGTTGTCTGGTGTGGGCAACGCAGATGACCTCAAGAAACTGGGCATCCCAGTGG
TATGCCACCTTCCTGGAGTTGGCCAAAATCTGCAAGACCACCTGGAGGTATACATCCAGC
AGGCGTGCACCCACCCCATCACCCTCCACTCAGCACAGAAGCCCTTGAGGAAGGTTCAGA
TTGGCCTGGAGTGGCTTTGGAGGTTCACAGGGTATGGAGCCACGGCCCATCTGGAAACAG
GTGGGTTCATCCGGAGCCAGCCTGGGGTCCCCCACCCGGACATCCAGTTCCACTTCCTGC
CATCCCAGGTGATCGACCATGGGCGGGTCCCCACGCAGCAGGAGGCTTACCAGGTGCATG
TCGGGCCCATGCGGGGCACGAGCGTGGGCTGGCTCAAACTGAGAAGTGCCAACCCCCATG
ACCACCCTGTGATTCAACCCAACTACTTGTCAACAGAAACTGACATTGATGACTTCCGTC
ATTGTGTGAGGCTGACCAGAGAAATTTTTGCCCAGAAAGCCCTGGCACCATTCCGAGGGA
AGGAGCTCCAGCCAGGAAGCCATGTCCAATCAGATAAGGAGATAGATGCCTTTGTGCGCG
CGAAAGCAGACAGTGCCTACCACCCGTCGTGCACCTGCAAAATGGGCCAGCCCTCTGATC
CCATGGCCGTGGTGGACCCACAGACCAGGGTGCTCGGGGTGGAAAACCTCAGGGTGGTTG
ATGCGTCCATCATGCCCAGTGTAGTCAGCGGCAACCTGAACGCCCCCACCATCATGATTG
CAGAGAAGGCCGCCGACATCATCAGGGGCCGGCCAGCACTCTGGGATGAGGATGTCCCTG
TCTACAAGCCGAGGACTCTGGCTACCCAGCGTTGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTCGGCTGGATGGACATGACCATCCACAAAGGCAAGCGCTGGAGCACGGCTTGTGCAT
ACCTGCACCCAGCACTGAGTCGCCCCAACCTCACAGCTGAGGCCCAGACGCTTGTGAGTA
GGGTGCTATTTGAAGGCACCCGTGCAGTAGGTGTGGAGTATATCAAGAATGGCCAGAGCC
ACAGGGCTTATGCCAGCAAGGAGGTGATTCTGAGTGGAGGTGTCATCAACTCTCCACAGC
TGCTCATGTTGTCTGGTGTGGGCAACGCAGATGACCTCAAGAAACTGGGCATCCCAGTGG
TATGCCACCTTCCTGGAGTTGGCCAAAATCTGCAAGACCACCTGGAGGTATACATCCAGC
AGGCGTGCACCCACCCCATCACCCTCCACTCAGCACAGAAGCCCTTGAGGAAGGTTCAGA
TTGGCCTGGAGTGGCTTTGGAGGTTCACAGGGTATGGAGCCACGGCCCATCTGGAAACAG
GTGGGTTCATCCGGAGCCAGCCTGGGGTCCCCCACCCGGACATCCAGTTCCACTTCCTGC
CATCCCAGGTGATCGACCATGGGCGGGTCCCCACGCAGCAGGAGGCTTACCAGGTGCATG
TCGGGCCCATGCGGGGCACGAGCGTGGGCTGGCTCAAACTGAGAAGTGCCAACCCCCATG
ACCACCCTGTGATTCAACCCAACTACTTGTCAACAGAAACTGACATTGATGACTTCCGTC
ATTGTGTGAGGCTGACCAGAGAAATTTTTGCCCAGAAAGCCCTGGCACCATTCCGAGGGA
AGGAGCTCCAGCCAGGAAGCCATGTCCAATCAGATAAGGAGATAGATGCCTTTGTGCGCG
CGAAAGCAGACAGTGCCTACCACCCGTCGTGCACCTGCAAAATGGGCCAGCCCTCTGATC
CCATGGCCGTGGTGGACCCACAGACCAGGGTGCTCGGGGTGGAAAACCTCAGGGTGGTTG
ATGCGTCCATCATGCCCAGTGTAGTCAGCGGCAACCTGAACGCCCCCACCATCATGATTG
CAGAGAAGGCCGCCGACATCATCAGGGGCCGGCCAGCACTCTGGGATGAGGATGTCCCTG
TCTACAAGCCGAGGACTCTGGCTACCCAGCGTTGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61874174|ref|XP_581474.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61874174|ref|XP_581474.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               32-186, gnl|bosTau2|chr22 (35949768-35949922)
               

               
               32-186, gnl|Hg17|chr3 (53831711-53831557)
               

               
               32-186, gnl|Mm7|chr14 (27462454-27462608)
               


               
               448-596, gnl|bosTau2|chr22 (35969859-35970007)
               

               
               448-596, gnl|Hg17|chr3 (53828744-53828596)
               

               
               448-596, gnl|Mm7|chr14 (27464957-27465105)
               


               
               683-1116, gnl|bosTau2|chr22 (35971274-35971707)
               

               
               683-1116, gnl|Hg17|chr3 (53827276-53826843)
               

               
               683-1116, gnl|Mm7|chr14 (27466170-27466603)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-186, gnl|bosTau2|chr22 (35949768-35949922)
               

               
               32-186, gnl|Hg17|chr3 (53831711-53831557)
               

               
               32-186, gnl|Mm7|chr14 (27462454-27462608)
               


               
               448-596, gnl|bosTau2|chr22 (35969859-35970007)
               

               
               448-596, gnl|Hg17|chr3 (53828744-53828596)
               

               
               448-596, gnl|Mm7|chr14 (27464957-27465105)
               


               
               683-1116, gnl|bosTau2|chr22 (35971274-35971707)
               

               
               683-1116, gnl|Hg17|chr3 (53827276-53826843)
               

               
               683-1116, gnl|Mm7|chr14 (27466170-27466603)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	32-186, gnl\|bosTau2\|chr22 (35949768-35949922)
	32-186, gnl\|Hg17\|chr3 (53831711-53831557)
	32-186, gnl\|Mm7\|chr14 (27462454-27462608)

	448-596, gnl\|bosTau2\|chr22 (35969859-35970007)
	448-596, gnl\|Hg17\|chr3 (53828744-53828596)
	448-596, gnl\|Mm7\|chr14 (27464957-27465105)

	683-1116, gnl\|bosTau2\|chr22 (35971274-35971707)
	683-1116, gnl\|Hg17\|chr3 (53827276-53826843)
	683-1116, gnl\|Mm7\|chr14 (27466170-27466603)