Non-Coding RNA Search

Ss1.1-Pig2-97K11.5

Sequence:


               
               AAACCATGCCCCCGAAACCTGCTGCAGACGCCCCCCCGCCAGCTGCTGCAGCAGCTCCAC
CAGCTCCAGGAGCCCCACCAGCCCCAGAGGCCCCACCAGCTCCAGGAGCCCCACCTGCTG
AGACCAAGCCACCTGAACAGACACCTGAAGAAATGTCATTTTATGCTCCGGATTACCTAT
ATTTGACCATAGTGGCTCTAATTCTTTTCCCTCCCCTGGGAATACCAGCCATCCTCTTCT
CTCGCAAGACCAAAGAGGCCAACAAGAACAGCAAATGGGAAGAGGCTTATATCAACTCAG
GCCGAACTGGTTGGCTGGATGTATTCGCCATACTTATCGGTTTAGGCCTCATTTATTACC
TGGTCCTATTTATGTGAAGGCCAGGCCCAGTAGCCAATGGGTTCATCCACTCCATCTGGA
CCCAGCCACCAAGACACTAACCAGCTAAATCAGCCACCATGCAAGAAACCAACAGCTGAG
ACATCTCTTAGCCAGGAAACCTACCAGCCAAGGGACTCGACATTCAAGCAAACCACTAGC
CCCGAAACACCATACGACCTCATCCTCTTAGCCTCCAAATCTGGCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACCATGCCCCCGAAACCTGCTGCAGACGCCCCCCCGCCAGCTGCTGCAGCAGCTCCAC
CAGCTCCAGGAGCCCCACCAGCCCCAGAGGCCCCACCAGCTCCAGGAGCCCCACCTGCTG
AGACCAAGCCACCTGAACAGACACCTGAAGAAATGTCATTTTATGCTCCGGATTACCTAT
ATTTGACCATAGTGGCTCTAATTCTTTTCCCTCCCCTGGGAATACCAGCCATCCTCTTCT
CTCGCAAGACCAAAGAGGCCAACAAGAACAGCAAATGGGAAGAGGCTTATATCAACTCAG
GCCGAACTGGTTGGCTGGATGTATTCGCCATACTTATCGGTTTAGGCCTCATTTATTACC
TGGTCCTATTTATGTGAAGGCCAGGCCCAGTAGCCAATGGGTTCATCCACTCCATCTGGA
CCCAGCCACCAAGACACTAACCAGCTAAATCAGCCACCATGCAAGAAACCAACAGCTGAG
ACATCTCTTAGCCAGGAAACCTACCAGCCAAGGGACTCGACATTCAAGCAAACCACTAGC
CCCGAAACACCATACGACCTCATCCTCTTAGCCTCCAAATCTGGCATC

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               75-239, gnl|bosTau2|chr18 (39520776-39520949)
               

               
               75-239, gnl|Hg17|chr19 (40769065-40769273)
               


               
               247-577, gnl|bosTau2|chr18 (39521169-39521495)
               

               
               247-577, gnl|canFam2|chr1 (119964524-119964140)
               

               
               247-577, gnl|hg17|chr19 (40769715-40770124)
               

               
               247-577, gnl|Hg17|chr19 (40769761-40770099)
               

               
               247-577, gnl|loxAfr1|scaffold_75335 (4294-3878)
               

               
               247-577, gnl|mm7|chr7 (27612451-27612051)
               

               
               247-577, gnl|Mm7|chr7 (27612403-27612074)
               

               
               247-577, gnl|oryCun1|scaffold_176463 (3983-4400)
               

               
               247-577, gnl|rheMac2|chr19 (42073274-42073684)
               

               
               247-577, gnl|rn3|chr1 (85804488-85804080)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               75-239, gnl|bosTau2|chr18 (39520776-39520949)
               

               
               75-239, gnl|Hg17|chr19 (40769065-40769273)
               


               
               247-577, gnl|bosTau2|chr18 (39521169-39521495)
               

               
               247-577, gnl|canFam2|chr1 (119964524-119964140)
               

               
               247-577, gnl|hg17|chr19 (40769715-40770124)
               

               
               247-577, gnl|Hg17|chr19 (40769761-40770099)
               

               
               247-577, gnl|loxAfr1|scaffold_75335 (4294-3878)
               

               
               247-577, gnl|mm7|chr7 (27612451-27612051)
               

               
               247-577, gnl|Mm7|chr7 (27612403-27612074)
               

               
               247-577, gnl|oryCun1|scaffold_176463 (3983-4400)
               

               
               247-577, gnl|rheMac2|chr19 (42073274-42073684)
               

               
               247-577, gnl|rn3|chr1 (85804488-85804080)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	75-239, gnl\|bosTau2\|chr18 (39520776-39520949)
	75-239, gnl\|Hg17\|chr19 (40769065-40769273)

	247-577, gnl\|bosTau2\|chr18 (39521169-39521495)
	247-577, gnl\|canFam2\|chr1 (119964524-119964140)
	247-577, gnl\|hg17\|chr19 (40769715-40770124)
	247-577, gnl\|Hg17\|chr19 (40769761-40770099)
	247-577, gnl\|loxAfr1\|scaffold_75335 (4294-3878)
	247-577, gnl\|mm7\|chr7 (27612451-27612051)
	247-577, gnl\|Mm7\|chr7 (27612403-27612074)
	247-577, gnl\|oryCun1\|scaffold_176463 (3983-4400)
	247-577, gnl\|rheMac2\|chr19 (42073274-42073684)
	247-577, gnl\|rn3\|chr1 (85804488-85804080)