Non-Coding RNA Search

Ss1.1-Pig2-97K21.5

Sequence:


               
               GATTTGTGTCTGATCTTTCACATTTGACAGTTGCTTGGAAATGATGCTAATTAATGAAGA
GGAGCAGCCACTATTGGTGTATTTTTCACAGATCGGTGCTTTCTAAATAGAAATTGAAAG
TAACTCCTAACACTGAATGGGTTTGCTTTTGAAAAAGTAATGATCTTCTGGTGCAAACAC
AGTTGCTTATGGACTTAAGCCTTGGCCCTGGTGGGGAATTTGGTCAGATTTTACGATCTC
TGTCAAAGAGTAGACAGCTGAACTCACACCACACCCAGCTTATAAAACGCCCTGGAAGAT
GGAGGAGCACCAGAGGGAAAGGACGTTGTGCAGCCTGGACTCAGTTAATTGTGTTTAAAA
TGCCAGATGCTAAAGAGTAACATGATTCCTTGCTGATCCCTTAATTCTAAGTCATCCAAC
ACCATGAAGCAGCCTGCATGTGAGGAATGGAAAGAGCATTCAGGGTCTGCAAGTGACAGC
CTCTAACTAAAACGGGGTGGTGCCAGGCAGGTTAGAGTGTTTAAAGCTGACACCACCATG
GTCACATTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTTGTGTCTGATCTTTCACATTTGACAGTTGCTTGGAAATGATGCTAATTAATGAAGA
GGAGCAGCCACTATTGGTGTATTTTTCACAGATCGGTGCTTTCTAAATAGAAATTGAAAG
TAACTCCTAACACTGAATGGGTTTGCTTTTGAAAAAGTAATGATCTTCTGGTGCAAACAC
AGTTGCTTATGGACTTAAGCCTTGGCCCTGGTGGGGAATTTGGTCAGATTTTACGATCTC
TGTCAAAGAGTAGACAGCTGAACTCACACCACACCCAGCTTATAAAACGCCCTGGAAGAT
GGAGGAGCACCAGAGGGAAAGGACGTTGTGCAGCCTGGACTCAGTTAATTGTGTTTAAAA
TGCCAGATGCTAAAGAGTAACATGATTCCTTGCTGATCCCTTAATTCTAAGTCATCCAAC
ACCATGAAGCAGCCTGCATGTGAGGAATGGAAAGAGCATTCAGGGTCTGCAAGTGACAGC
CTCTAACTAAAACGGGGTGGTGCCAGGCAGGTTAGAGTGTTTAAAGCTGACACCACCATG
GTCACATTTTTG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-552, gnl|bosTau2|chr17 (35959749-35959195)
               

               
               1-552, gnl|Hg17|chr12 (108849401-108848854)
               

               
               1-552, gnl|Mm7|chr5 (113961285-113960796)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-552, gnl|bosTau2|chr17 (35959749-35959195)
               

               
               1-552, gnl|Hg17|chr12 (108849401-108848854)
               

               
               1-552, gnl|Mm7|chr5 (113961285-113960796)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               sin (0.174948)
               

               
               ski (0.146735)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               ski (0.146735)
               

               
               pla (0.133672)

	1-552, gnl\|bosTau2\|chr17 (35959749-35959195)
	1-552, gnl\|Hg17\|chr12 (108849401-108848854)
	1-552, gnl\|Mm7\|chr5 (113961285-113960796)