Non-Coding RNA Search

Ss1.1-Pig2-97N08.5

Sequence:


               
               GTGCTTATCCTCAGCATCACAGGGCGGTACTCAGTGGAGCCAGGATGAGTGCAGAGCCTG
AGTCAAACGAGTCCTGGTCACCACACCAGGTTGCCTCTGGTCGCTGTGATGGTCGGACTC
CTCTTGCTCTCTCCCCCTCCTCCCCTTCTCCCTCCCCTACCTCCCCCCTGCCTTGAGGAG
GCAACACTGAATGGAGCCCTGGAGCCAGAGTTGGAGATGGGGTTTGGGCTTGGCCCCCCT
CGTAACCCCCAGGGACCATCTCTCTTGCCCCCTCCTCAGGCTTATGAGCGGCAGGTCCCA
CCCCGAGCTGTCATCAACAGTGCGGGCTACAAAATCCTCACCTCTGTGGACCAGTACCTG
GAGCTCGTTGGCAACTCCTTACCAGGTAAAGGACCAAAATCGGGCAACACCCCGATCCTC
AAGTGCCCCACGCAGTTCCCGCTCATCCTCTGGCATCCCTCTGCCCGTCACTACTACTTC
TGCATGATGACAGAAGCCGAGCAGGACAAGTGGCAGGCTGTCCTGCAGGACTGCGTCCGG
CACTGCAACAACGGGATCCCCGAGGACTCCAAGGTGGAGGGCCCCGCGTTCACGGACGCC
ATCCGCATGTACCGCCAGTCGAAGGAGCTGTACGGCACCTGGGAGATGCTGTGTGGGAAC
GAGGTGCAGATCCTGAGCAACCTGGTCATGGAGGAGCTGGGTCCTGAGCTGAAGCAGAGC
TTGCCCCCCGGCTGAAGGGGAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCTTATCCTCAGCATCACAGGGCGGTACTCAGTGGAGCCAGGATGAGTGCAGAGCCTG
AGTCAAACGAGTCCTGGTCACCACACCAGGTTGCCTCTGGTCGCTGTGATGGTCGGACTC
CTCTTGCTCTCTCCCCCTCCTCCCCTTCTCCCTCCCCTACCTCCCCCCTGCCTTGAGGAG
GCAACACTGAATGGAGCCCTGGAGCCAGAGTTGGAGATGGGGTTTGGGCTTGGCCCCCCT
CGTAACCCCCAGGGACCATCTCTCTTGCCCCCTCCTCAGGCTTATGAGCGGCAGGTCCCA
CCCCGAGCTGTCATCAACAGTGCGGGCTACAAAATCCTCACCTCTGTGGACCAGTACCTG
GAGCTCGTTGGCAACTCCTTACCAGGTAAAGGACCAAAATCGGGCAACACCCCGATCCTC
AAGTGCCCCACGCAGTTCCCGCTCATCCTCTGGCATCCCTCTGCCCGTCACTACTACTTC
TGCATGATGACAGAAGCCGAGCAGGACAAGTGGCAGGCTGTCCTGCAGGACTGCGTCCGG
CACTGCAACAACGGGATCCCCGAGGACTCCAAGGTGGAGGGCCCCGCGTTCACGGACGCC
ATCCGCATGTACCGCCAGTCGAAGGAGCTGTACGGCACCTGGGAGATGCTGTGTGGGAAC
GAGGTGCAGATCCTGAGCAACCTGGTCATGGAGGAGCTGGGTCCTGAGCTGAAGCAGAGC
TTGCCCCCCGGCTGAAGGGGAAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55632347|ref|XP_520271.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55632347|ref|XP_520271.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               122-241, - strand, RNAz p=0.844889

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               122-241, - strand, RNAz p=0.844889

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               5-396, gnl|bosTau2|chr11 (74499002-74499385)
               

               
               5-396, gnl|Hg17|chr9 (127367252-127366880)
               


               
               553-669, gnl|bosTau2|chr11 (74506119-74506235)
               

               
               553-669, gnl|canFam2|chr9 (59191747-59191596)
               

               
               553-669, gnl|danRer3|chr21 (4083227-4083349)
               

               
               553-669, gnl|fr1|chrUn (239822037-239822163)
               

               
               553-669, gnl|galGal2|chrUn (106197556-106197404)
               

               
               553-669, gnl|hg17|chr9 (127359652-127359803)
               

               
               553-669, gnl|Hg17|chr9 (127359775-127359659)
               

               
               553-669, gnl|mm7|chr2 (32926428-32926278)
               

               
               553-669, gnl|Mm7|chr2 (32926303-32926419)
               

               
               553-669, gnl|monDom2|scaffold_51 (1833143-1833286)
               

               
               553-669, gnl|panTro1|chr11 (112176888-112177039)
               

               
               553-669, gnl|rheMac2|chr15 (99061423-99061272)
               

               
               553-669, gnl|rn3|chr3 (11802160-11801995)
               

               
               553-669, gnl|tetNig1|chrUn_random (140019329-140019454)
               

               
               553-669, gnl|xenTro1|scaffold_257 (501166-501294)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-396, gnl|bosTau2|chr11 (74499002-74499385)
               

               
               5-396, gnl|Hg17|chr9 (127367252-127366880)
               


               
               553-669, gnl|bosTau2|chr11 (74506119-74506235)
               

               
               553-669, gnl|canFam2|chr9 (59191747-59191596)
               

               
               553-669, gnl|danRer3|chr21 (4083227-4083349)
               

               
               553-669, gnl|fr1|chrUn (239822037-239822163)
               

               
               553-669, gnl|galGal2|chrUn (106197556-106197404)
               

               
               553-669, gnl|hg17|chr9 (127359652-127359803)
               

               
               553-669, gnl|Hg17|chr9 (127359775-127359659)
               

               
               553-669, gnl|mm7|chr2 (32926428-32926278)
               

               
               553-669, gnl|Mm7|chr2 (32926303-32926419)
               

               
               553-669, gnl|monDom2|scaffold_51 (1833143-1833286)
               

               
               553-669, gnl|panTro1|chr11 (112176888-112177039)
               

               
               553-669, gnl|rheMac2|chr15 (99061423-99061272)
               

               
               553-669, gnl|rn3|chr3 (11802160-11801995)
               

               
               553-669, gnl|tetNig1|chrUn_random (140019329-140019454)
               

               
               553-669, gnl|xenTro1|scaffold_257 (501166-501294)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	5-396, gnl\|bosTau2\|chr11 (74499002-74499385)
	5-396, gnl\|Hg17\|chr9 (127367252-127366880)

	553-669, gnl\|bosTau2\|chr11 (74506119-74506235)
	553-669, gnl\|canFam2\|chr9 (59191747-59191596)
	553-669, gnl\|danRer3\|chr21 (4083227-4083349)
	553-669, gnl\|fr1\|chrUn (239822037-239822163)
	553-669, gnl\|galGal2\|chrUn (106197556-106197404)
	553-669, gnl\|hg17\|chr9 (127359652-127359803)
	553-669, gnl\|Hg17\|chr9 (127359775-127359659)
	553-669, gnl\|mm7\|chr2 (32926428-32926278)
	553-669, gnl\|Mm7\|chr2 (32926303-32926419)
	553-669, gnl\|monDom2\|scaffold_51 (1833143-1833286)
	553-669, gnl\|panTro1\|chr11 (112176888-112177039)
	553-669, gnl\|rheMac2\|chr15 (99061423-99061272)
	553-669, gnl\|rn3\|chr3 (11802160-11801995)
	553-669, gnl\|tetNig1\|chrUn_random (140019329-140019454)
	553-669, gnl\|xenTro1\|scaffold_257 (501166-501294)