Non-Coding RNA Search

Ss1.1-Pig2-97O05.5

Sequence:


               
               TTTTTAAGAATGCATTCCCAAAAAAAAAAAAAAAAAAAAAAAGAATGCATTCCCATGTTG
AAACCAGACTCCTGCATTATAAGAATTTAGTAACTTTCCTGTGCTCTGCCTTGCCCTGTG
CTACCTGGGAGAGCCTGGCTTTTCATCCTTGCAGAAATGCTAATGTCCTCTGGGTGAGAG
GACTTGCTCTAGCTGGTGTACTCTGAGAAGAGGGTCATGTTCTTGTTTTGTTCTCCTAAC
AAGATAACCTTATTGCTTGTCTTCCCCCAACCTGCCCTCCACCCAGATTAGCTACTCTGA
AGCTGAATATTAGCTAGATATTGCCATGAGGTGGGCATTAAGACAGTATTCTTTAAACAT
GAAAATCTCATGGCCGCAGTTATTTTCATGAGCCAGACTGCTTAAATTAGTGTGTTGTTT
TTTCCTTTCCGTTCATTCTCCCTGCCCCCTCCTATTTAAAGAATATTCTTGGGAAGCATC
TGCTTAATATTGCTGCTAACAGCTAGCCTTACCCCACACTGCAGGTGGTAGTAAAGCTGT
TTACACAGACAGTGAGTCTGGGTCAGTGAAGAACAGAATTTGGGCATTTAAATGATAAAA
ACAAAAAGCCAGGACTATTAAAGCACTTTACAAATCTCTATAATCAAAAGTTGCCTCTTT
GAGGCAGAGGAGAGAAGCACAGAGCCCCTAGTTCCCTGAACAGAAGATGCCACAGAGCAG
AAGGGGGTTGTCTTGGTGGATTGTGTGTCCCACATTTAGGAGTTATTTTTTAAAAGGATG
GGGGAAGTGAAATAAATTTAATAATTGTCTTAATAATTGTGTTCTGACTGAACTTCCTAG
TTTTTGCATCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTAAGAATGCATTCCCAAAAAAAAAAAAAAAAAAAAAAAGAATGCATTCCCATGTTG
AAACCAGACTCCTGCATTATAAGAATTTAGTAACTTTCCTGTGCTCTGCCTTGCCCTGTG
CTACCTGGGAGAGCCTGGCTTTTCATCCTTGCAGAAATGCTAATGTCCTCTGGGTGAGAG
GACTTGCTCTAGCTGGTGTACTCTGAGAAGAGGGTCATGTTCTTGTTTTGTTCTCCTAAC
AAGATAACCTTATTGCTTGTCTTCCCCCAACCTGCCCTCCACCCAGATTAGCTACTCTGA
AGCTGAATATTAGCTAGATATTGCCATGAGGTGGGCATTAAGACAGTATTCTTTAAACAT
GAAAATCTCATGGCCGCAGTTATTTTCATGAGCCAGACTGCTTAAATTAGTGTGTTGTTT
TTTCCTTTCCGTTCATTCTCCCTGCCCCCTCCTATTTAAAGAATATTCTTGGGAAGCATC
TGCTTAATATTGCTGCTAACAGCTAGCCTTACCCCACACTGCAGGTGGTAGTAAAGCTGT
TTACACAGACAGTGAGTCTGGGTCAGTGAAGAACAGAATTTGGGCATTTAAATGATAAAA
ACAAAAAGCCAGGACTATTAAAGCACTTTACAAATCTCTATAATCAAAAGTTGCCTCTTT
GAGGCAGAGGAGAGAAGCACAGAGCCCCTAGTTCCCTGAACAGAAGATGCCACAGAGCAG
AAGGGGGTTGTCTTGGTGGATTGTGTGTCCCACATTTAGGAGTTATTTTTTAAAAGGATG
GGGGAAGTGAAATAAATTTAATAATTGTCTTAATAATTGTGTTCTGACTGAACTTCCTAG
TTTTTGCATCAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               344-463, - strand, RNAz p=0.788708

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               344-463, - strand, RNAz p=0.788708

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               40-852, gnl|bosTau2|chr16 (63274-64055)
               

               
               40-852, gnl|Hg17|chr1 (199724898-199725664)
               

               
               40-852, gnl|Mm7|chr1 (134236799-134235851)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-852, gnl|bosTau2|chr16 (63274-64055)
               

               
               40-852, gnl|Hg17|chr1 (199724898-199725664)
               

               
               40-852, gnl|Mm7|chr1 (134236799-134235851)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fcc (0.197785)
               

               
               lnt (0.142308)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               lnt (0.142308)
               

               
               cty (0.10408)

	40-852, gnl\|bosTau2\|chr16 (63274-64055)
	40-852, gnl\|Hg17\|chr1 (199724898-199725664)
	40-852, gnl\|Mm7\|chr1 (134236799-134235851)