Non-Coding RNA Search

Ss1.1-Pig2-98K08.5

Sequence:


               
               CTCTGGGGTCCAAGCTCCATTCTCTCACTCCCCCAGGCTGGAGCAGGCTGACCTCATTCT
AGCCGTGCTGGATGCTTCTGACCTGACCTCTTCGTCTAGCTGTAACTTCCTGGATACTGT
TGTCATCCCCACGGTTGCTGGGAGCCCCCATGGGAGCAGCCAGCGCCTCCTGCTGGTGCT
GAATAAGTCGGACCTGCTGCCTTCTGGGGGCCCAGACCTCCATCCTGACCTGCCCCCCTA
CCTGCTACTATCCTGTCTGACCGGCGAGGGGTTGGATGGCCTCCTGGAAGCGCTGAGGAA
GGAGCTGGCTACATTGTGCGGGGATCCATCCACAGGCCCACCGCTTCTCACACGGGCGAG
GCACCAGCATCACCTTCAGGGCTGCCTGGATGCCCTTGGTCACTACAAGCAAGCAAAAGA
CCTAGCTCTGGCAGCTGAGGCACTCCGGGTGGCCCGAGGGCACCTGGCCCGCCTCACCGG
CCGAGGGGGCACCGAGGAGATCCTGGACATCATCTTCCGAGACTTCTGTGTGGGCAAGTG
AGAGGACAGCCGGAGCTCAGGCCCAGGCTGAATGGACACCCAGAAGTCTTGATACAGCTG
GGAACAGCTTAGGCCAAGTGGGAGTCTCTCCTCCTCGGGGAAGAATTTGACCCCAAATGG
TAAAGCCTCTGTTGCTGGTGGTACTCAAGCTGCAGCTGACCAGGTTCCCTAGTGGGGCCT
TGCTGGGAGTTCAGGCCCTGGAGTAGGACTGAATGCAGGAAGCACCTGATGCTGGGAGAG
TACGGGTGAGCTGGAGGTTGGAGGGTCTCAGGGGTCTTTGTTTCATGGTTTTTAATTTAT
TTTGCAAATACCAAAGGAATGTTAAAAAAAAAAAATACACCTCAGAAATGTTTAACTACC
CCCTCCCCTGGGGTCAGGGCTTAACTTATATCCTTTCGGAACTTTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGGGGTCCAAGCTCCATTCTCTCACTCCCCCAGGCTGGAGCAGGCTGACCTCATTCT
AGCCGTGCTGGATGCTTCTGACCTGACCTCTTCGTCTAGCTGTAACTTCCTGGATACTGT
TGTCATCCCCACGGTTGCTGGGAGCCCCCATGGGAGCAGCCAGCGCCTCCTGCTGGTGCT
GAATAAGTCGGACCTGCTGCCTTCTGGGGGCCCAGACCTCCATCCTGACCTGCCCCCCTA
CCTGCTACTATCCTGTCTGACCGGCGAGGGGTTGGATGGCCTCCTGGAAGCGCTGAGGAA
GGAGCTGGCTACATTGTGCGGGGATCCATCCACAGGCCCACCGCTTCTCACACGGGCGAG
GCACCAGCATCACCTTCAGGGCTGCCTGGATGCCCTTGGTCACTACAAGCAAGCAAAAGA
CCTAGCTCTGGCAGCTGAGGCACTCCGGGTGGCCCGAGGGCACCTGGCCCGCCTCACCGG
CCGAGGGGGCACCGAGGAGATCCTGGACATCATCTTCCGAGACTTCTGTGTGGGCAAGTG
AGAGGACAGCCGGAGCTCAGGCCCAGGCTGAATGGACACCCAGAAGTCTTGATACAGCTG
GGAACAGCTTAGGCCAAGTGGGAGTCTCTCCTCCTCGGGGAAGAATTTGACCCCAAATGG
TAAAGCCTCTGTTGCTGGTGGTACTCAAGCTGCAGCTGACCAGGTTCCCTAGTGGGGCCT
TGCTGGGAGTTCAGGCCCTGGAGTAGGACTGAATGCAGGAAGCACCTGATGCTGGGAGAG
TACGGGTGAGCTGGAGGTTGGAGGGTCTCAGGGGTCTTTGTTTCATGGTTTTTAATTTAT
TTTGCAAATACCAAAGGAATGTTAAAAAAAAAAAATACACCTCAGAAATGTTTAACTACC
CCCTCCCCTGGGGTCAGGGCTTAACTTATATCCTTTCGGAACTTTCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8C1M1_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8C1M1_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-94, + strand, RNAz p=0.774645

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-94, + strand, RNAz p=0.774645

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AY078987, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AY078987, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-318, gnl|bosTau2|chr7 (2761052-2760736)
               

               
               1-318, gnl|Hg17|chr19 (17312817-17313134)
               

               
               1-318, gnl|Mm7|chr8 (69959103-69959443)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-318, gnl|bosTau2|chr7 (2761052-2760736)
               

               
               1-318, gnl|Hg17|chr19 (17312817-17313134)
               

               
               1-318, gnl|Mm7|chr8 (69959103-69959443)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	1-318, gnl\|bosTau2\|chr7 (2761052-2760736)
	1-318, gnl\|Hg17\|chr19 (17312817-17313134)
	1-318, gnl\|Mm7\|chr8 (69959103-69959443)

	fhi (0.169578)
	nco (0.161734)
	csp (0.161186)
	pla (0.133672)
	cov (0.132153)
	ecc (0.115035)
	spc (0.113366)
	nbm (0.0993246)