Non-Coding RNA Search

Ss1.1-Pig2-98N08.5

Sequence:


               
               GGTGTTTCTGTCCCAGGAACCTTTCTTCAGCCTACAGCTCACTCTCCAGCAGGAAACCAG
GTGCAAGCTGGGAAACAGTCCCACATTCCTTACAGCCAGCAACGGCCCTCTGGACCAGGG
CCAATGAACCAGGGACCTCAACAACCACAGCCACCTTCTCAGCAACCCCTTACATCTTTA
CCAGCTCAGCCAACAGCACAGTCTACAAGCCAGTTGCAGGTTCAAGCTCTAGCTCAGCAA
CAGCAGTCCCCTACAAAAGCTGTGCCAGCTTTGGGGAAAAGCCCTCCTCACCACTCTGGA
TTCCAGCAGTATCCACAGGCAGATGCCTCCAAACAGCTGTGGAATCCCCCTCAGGTTCAA
GGCCCATTAGGGAAAATCATGCCTGTGAAACAGCCCTACTACCTTCAAACCCAAGACCCC
ATAAAACTGTTTGAGCCGTCATTGCAACCTCCTGTAATGCAGCAACAGCCTCTAGAGAAA
AAAATGAAGCCTTTTCCCATGGAGCCATATAACCATAATCCCTCAGAAGTCAAGATCCCA
GAATTCTACTGGGATTCTTCCTACAGCATGGCTGGTAACAGAGCTGTAATGTCACAGCAA
GCCAACATGGACCGCAGGGGCAAACGGTCCCCAGGAGTCTTCCGTCCAGAGCAGGATCCT
GTGCCCAGGATGCCATTTGAGAAATCCTTACTGGAGAAGCCCTCGGAGCTCATGTCACAT
TCATCCCCTTTCCTGTCCCTCACCGGATTCTCTCTCAATCAGGAAAGATATCCCAATAAC
AGTGTGTTCAATGAGGTATATGGAAAAAACCTGACAACCAGCTCCAAGGCAGAACTTAAC
CCTACGATTGCCCCCCAGGAAACATCACTCTACTCCCTTTTTGAGGGGACTCCGTGGTCT
CCATCACTTCCAGCCAGTTCAGATCATTCAACACCAGCCAGCCAATCTCCTCATTCCTCC
AACCCAAGCAGCCTGCCAAGCTCCCCTCCAACACACAACCATAATTCTGTCCCATTCTCC
AACTTTGGACCCATTGGGACTCCAGATAACAGGGATAGGAGAACTGCAGATCGGTGGAAA
ACTGATAAGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGTTTCTGTCCCAGGAACCTTTCTTCAGCCTACAGCTCACTCTCCAGCAGGAAACCAG
GTGCAAGCTGGGAAACAGTCCCACATTCCTTACAGCCAGCAACGGCCCTCTGGACCAGGG
CCAATGAACCAGGGACCTCAACAACCACAGCCACCTTCTCAGCAACCCCTTACATCTTTA
CCAGCTCAGCCAACAGCACAGTCTACAAGCCAGTTGCAGGTTCAAGCTCTAGCTCAGCAA
CAGCAGTCCCCTACAAAAGCTGTGCCAGCTTTGGGGAAAAGCCCTCCTCACCACTCTGGA
TTCCAGCAGTATCCACAGGCAGATGCCTCCAAACAGCTGTGGAATCCCCCTCAGGTTCAA
GGCCCATTAGGGAAAATCATGCCTGTGAAACAGCCCTACTACCTTCAAACCCAAGACCCC
ATAAAACTGTTTGAGCCGTCATTGCAACCTCCTGTAATGCAGCAACAGCCTCTAGAGAAA
AAAATGAAGCCTTTTCCCATGGAGCCATATAACCATAATCCCTCAGAAGTCAAGATCCCA
GAATTCTACTGGGATTCTTCCTACAGCATGGCTGGTAACAGAGCTGTAATGTCACAGCAA
GCCAACATGGACCGCAGGGGCAAACGGTCCCCAGGAGTCTTCCGTCCAGAGCAGGATCCT
GTGCCCAGGATGCCATTTGAGAAATCCTTACTGGAGAAGCCCTCGGAGCTCATGTCACAT
TCATCCCCTTTCCTGTCCCTCACCGGATTCTCTCTCAATCAGGAAAGATATCCCAATAAC
AGTGTGTTCAATGAGGTATATGGAAAAAACCTGACAACCAGCTCCAAGGCAGAACTTAAC
CCTACGATTGCCCCCCAGGAAACATCACTCTACTCCCTTTTTGAGGGGACTCCGTGGTCT
CCATCACTTCCAGCCAGTTCAGATCATTCAACACCAGCCAGCCAATCTCCTCATTCCTCC
AACCCAAGCAGCCTGCCAAGCTCCCCTCCAACACACAACCATAATTCTGTCCCATTCTCC
AACTTTGGACCCATTGGGACTCCAGATAACAGGGATAGGAGAACTGCAGATCGGTGGAAA
ACTGATAAGCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61884887|ref|XP_617287.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61884887|ref|XP_617287.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               308-426, - strand, RNAz p=0.694489

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               308-426, - strand, RNAz p=0.694489

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               308-681, gnl|bosTau2|chr16 (46279492-46279865)
               

               
               308-681, gnl|Hg17|chr1 (180246756-180247129)
               

               
               308-681, gnl|Mm7|chr1 (152805479-152805106)
               


               
               921-1092, gnl|bosTau2|chr16 (46284129-46284300)
               

               
               921-1092, gnl|canFam2|chr7 (19870123-19870350)
               

               
               921-1092, gnl|danRer3|chr2 (28925862-28926068)
               

               
               921-1092, gnl|dasNov1|scaffold_505 (163941-163711)
               

               
               921-1092, gnl|echTel1|scaffold_312347 (7641-7416)
               

               
               921-1092, gnl|galGal2|chr8 (7609918-7610133)
               

               
               921-1092, gnl|hg17|chr1 (180251517-180251745)
               

               
               921-1092, gnl|Hg17|chr1 (180251541-180251712)
               

               
               921-1092, gnl|mm7|chr1 (152801563-152801343)
               

               
               921-1092, gnl|Mm7|chr1 (152801544-152801373)
               

               
               921-1092, gnl|monDom2|scaffold_16 (37513380-37513608)
               

               
               921-1092, gnl|oryCun1|scaffold_183328 (3374-3146)
               

               
               921-1092, gnl|panTro1|chr1 (162815091-162815319)
               

               
               921-1092, gnl|rheMac2|chr1 (187099409-187099181)
               

               
               921-1092, gnl|tetNig1|chr15_random (36368-36185)
               

               
               921-1092, gnl|xenTro1|scaffold_126 (660251-660477)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               308-681, gnl|bosTau2|chr16 (46279492-46279865)
               

               
               308-681, gnl|Hg17|chr1 (180246756-180247129)
               

               
               308-681, gnl|Mm7|chr1 (152805479-152805106)
               


               
               921-1092, gnl|bosTau2|chr16 (46284129-46284300)
               

               
               921-1092, gnl|canFam2|chr7 (19870123-19870350)
               

               
               921-1092, gnl|danRer3|chr2 (28925862-28926068)
               

               
               921-1092, gnl|dasNov1|scaffold_505 (163941-163711)
               

               
               921-1092, gnl|echTel1|scaffold_312347 (7641-7416)
               

               
               921-1092, gnl|galGal2|chr8 (7609918-7610133)
               

               
               921-1092, gnl|hg17|chr1 (180251517-180251745)
               

               
               921-1092, gnl|Hg17|chr1 (180251541-180251712)
               

               
               921-1092, gnl|mm7|chr1 (152801563-152801343)
               

               
               921-1092, gnl|Mm7|chr1 (152801544-152801373)
               

               
               921-1092, gnl|monDom2|scaffold_16 (37513380-37513608)
               

               
               921-1092, gnl|oryCun1|scaffold_183328 (3374-3146)
               

               
               921-1092, gnl|panTro1|chr1 (162815091-162815319)
               

               
               921-1092, gnl|rheMac2|chr1 (187099409-187099181)
               

               
               921-1092, gnl|tetNig1|chr15_random (36368-36185)
               

               
               921-1092, gnl|xenTro1|scaffold_126 (660251-660477)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ill (0.175593)
               

               
               liv (0.146284)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               liv (0.146284)
               

               
               cty (0.10408)

	308-681, gnl\|bosTau2\|chr16 (46279492-46279865)
	308-681, gnl\|Hg17\|chr1 (180246756-180247129)
	308-681, gnl\|Mm7\|chr1 (152805479-152805106)

	921-1092, gnl\|bosTau2\|chr16 (46284129-46284300)
	921-1092, gnl\|canFam2\|chr7 (19870123-19870350)
	921-1092, gnl\|danRer3\|chr2 (28925862-28926068)
	921-1092, gnl\|dasNov1\|scaffold_505 (163941-163711)
	921-1092, gnl\|echTel1\|scaffold_312347 (7641-7416)
	921-1092, gnl\|galGal2\|chr8 (7609918-7610133)
	921-1092, gnl\|hg17\|chr1 (180251517-180251745)
	921-1092, gnl\|Hg17\|chr1 (180251541-180251712)
	921-1092, gnl\|mm7\|chr1 (152801563-152801343)
	921-1092, gnl\|Mm7\|chr1 (152801544-152801373)
	921-1092, gnl\|monDom2\|scaffold_16 (37513380-37513608)
	921-1092, gnl\|oryCun1\|scaffold_183328 (3374-3146)
	921-1092, gnl\|panTro1\|chr1 (162815091-162815319)
	921-1092, gnl\|rheMac2\|chr1 (187099409-187099181)
	921-1092, gnl\|tetNig1\|chr15_random (36368-36185)
	921-1092, gnl\|xenTro1\|scaffold_126 (660251-660477)