Non-Coding RNA Search

Ss1.1-Pig2-99P07.5

Sequence:


               
               CTCATCACTTCCCCTAAGTAAAATGCAAACAGAATGAAAAGAACACAAAAAGCTTCTTTC
CCATCTCAGGCCAAGTTGAAACCGAGGGAAGCAGCCTCAACCTGCAGCAGACAGCCTGGC
CACCATCCACCCTTCAGCTCCCTGAGATGCCAGCTGTTTGCTGCCTGCAGAGAGGCAGCT
GCTGCAACTCTGAGCACAGGGATGGCTCCAAGTGCTCAGCTGGTGTGGGGGTGTGATGAA
AACTCAGACTTGGGGATGTGATGTGCAGCCCTCAGGCTCAGGGAAGGGCAGTGGCCTTGC
TCTCCACCTGTAAACCAGACAGGAAAGAGTAGACGCCAGCTTCACAGTCCATGGGGCAAA
GCTAGCAGAATTTCATTTTGTCTGGTTTTTGTTTGGGGATGGGGAGCAATTAAATATACC
AAGAAAAAGTTTTATTTTTTATACCCTATGAGGGAGGCAGTTGGAAAATGGTATACCATC
ATAGAGATATATTGCATAAGAATCCTTAGGTCCTGTGCCCAATCTTTTTATTGCTTCTCA
GGGCAGGATTATTCTCGATTCCAACATAAGCTTGAAGGAGGTAAGGAGGCAGCTATATGC
CAGCTGCAAAATGTTACTTTGATGCCCACCTACACCAACCTCCCCTTTCCACACAGCATC
TCCCACCCCAATTTGAACACAGCTTTGAGAAGCAAAGTTTATGGCCCTAAAACTGACAGC
CTTGGTCCGAATGCGCTTTAGCTCTTCTGTCCTCTGAATTCTGCATCACCCCTCTTGCAT
ATGTCTCGAGGGGCCGGCTCTCTCCACAGTGTTGTATTCAAGTCCCCGACCCCTCCACAG
GGCCCGCCAGTGGTGCTGGGTTTTCTTTTTGCTTCCAACCTGAGTAGCGTGTGTGCTGAG
TTTCCCCTGTGTCCCCCTTGTTGGTCATGGCCTCCCTGGCCTTGTGGGGGCCCATCCTTC
CCATCCCGGCAGTGACTGGTGACAACGTGCAGTGCTAGCTCTTCATTCCCTCCAAGGGGT
GTGCACTCTTTTTATCCCTGCTCTTGCAAAAACAGATACAATTATGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCATCACTTCCCCTAAGTAAAATGCAAACAGAATGAAAAGAACACAAAAAGCTTCTTTC
CCATCTCAGGCCAAGTTGAAACCGAGGGAAGCAGCCTCAACCTGCAGCAGACAGCCTGGC
CACCATCCACCCTTCAGCTCCCTGAGATGCCAGCTGTTTGCTGCCTGCAGAGAGGCAGCT
GCTGCAACTCTGAGCACAGGGATGGCTCCAAGTGCTCAGCTGGTGTGGGGGTGTGATGAA
AACTCAGACTTGGGGATGTGATGTGCAGCCCTCAGGCTCAGGGAAGGGCAGTGGCCTTGC
TCTCCACCTGTAAACCAGACAGGAAAGAGTAGACGCCAGCTTCACAGTCCATGGGGCAAA
GCTAGCAGAATTTCATTTTGTCTGGTTTTTGTTTGGGGATGGGGAGCAATTAAATATACC
AAGAAAAAGTTTTATTTTTTATACCCTATGAGGGAGGCAGTTGGAAAATGGTATACCATC
ATAGAGATATATTGCATAAGAATCCTTAGGTCCTGTGCCCAATCTTTTTATTGCTTCTCA
GGGCAGGATTATTCTCGATTCCAACATAAGCTTGAAGGAGGTAAGGAGGCAGCTATATGC
CAGCTGCAAAATGTTACTTTGATGCCCACCTACACCAACCTCCCCTTTCCACACAGCATC
TCCCACCCCAATTTGAACACAGCTTTGAGAAGCAAAGTTTATGGCCCTAAAACTGACAGC
CTTGGTCCGAATGCGCTTTAGCTCTTCTGTCCTCTGAATTCTGCATCACCCCTCTTGCAT
ATGTCTCGAGGGGCCGGCTCTCTCCACAGTGTTGTATTCAAGTCCCCGACCCCTCCACAG
GGCCCGCCAGTGGTGCTGGGTTTTCTTTTTGCTTCCAACCTGAGTAGCGTGTGTGCTGAG
TTTCCCCTGTGTCCCCCTTGTTGGTCATGGCCTCCCTGGCCTTGTGGGGGCCCATCCTTC
CCATCCCGGCAGTGACTGGTGACAACGTGCAGTGCTAGCTCTTCATTCCCTCCAAGGGGT
GTGCACTCTTTTTATCCCTGCTCTTGCAAAAACAGATACAATTATGAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               5-680, gnl|bosTau2|chr1 (42044026-42044699)
               

               
               5-680, gnl|Hg17|chr3 (124484999-124484298)
               

               
               5-680, gnl|Mm7|chr16 (34979370-34979951)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-680, gnl|bosTau2|chr1 (42044026-42044699)
               

               
               5-680, gnl|Hg17|chr3 (124484999-124484298)
               

               
               5-680, gnl|Mm7|chr16 (34979370-34979951)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               ece (0.229305)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               jca (0.11396)

	5-680, gnl\|bosTau2\|chr1 (42044026-42044699)
	5-680, gnl\|Hg17\|chr3 (124484999-124484298)
	5-680, gnl\|Mm7\|chr16 (34979370-34979951)

	ece (0.229305)
	che (0.136314)
	pla (0.133672)
	cov (0.132153)
	jca (0.11396)