Non-Coding RNA Search

Ss1.1-Pig2-99P16.5

Sequence:


               
               AGCCCAGCGCCGGGACGGTGAGCGGTACCGAGCTGCGGCTGGAAGGGGATCAGAACGCAG
CGCTGGGGATTCGACTGGCACCGCGGGCTCTGCTCGGCGCGGAGTGGGGGGGCCCGCCTG
CTTGCCCTGGGCCCTCTGGATCCGCCCCCTCCCCAGTCCCGCCCCCTCGGAGCCTCCTCT
AGCTGCTCTGGGGCTGCTCCGAGGCCCGGGGCCCGCGGTCCTGGCGCCATGCGGGCATCG
CTGCTGTTGTCGGTGCTGCGGCCCGCAGGGCCAGTGGCCGTGGGCATCTCCCTGGGCTTC
ACTCTGAGCCTGCTCAGCGTCACCTGGGTGGAGGAGCCGTGCGGCCCAGGCCCGCCCCAA
CCCGGAGATTCTGAGCTGCCGCCGCGCGGCAACACAAACGCGGCACGCCGGCCCAACTCG
GTGCAACCTGGAGCAGAGCGCGAGAAGCCCGGGGCCGGCGCAGGAGCCGTGGAGAACTGG
GAGCCGCGCGTATTGCCCTATCACCCCGCACAGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCCAGCGCCGGGACGGTGAGCGGTACCGAGCTGCGGCTGGAAGGGGATCAGAACGCAG
CGCTGGGGATTCGACTGGCACCGCGGGCTCTGCTCGGCGCGGAGTGGGGGGGCCCGCCTG
CTTGCCCTGGGCCCTCTGGATCCGCCCCCTCCCCAGTCCCGCCCCCTCGGAGCCTCCTCT
AGCTGCTCTGGGGCTGCTCCGAGGCCCGGGGCCCGCGGTCCTGGCGCCATGCGGGCATCG
CTGCTGTTGTCGGTGCTGCGGCCCGCAGGGCCAGTGGCCGTGGGCATCTCCCTGGGCTTC
ACTCTGAGCCTGCTCAGCGTCACCTGGGTGGAGGAGCCGTGCGGCCCAGGCCCGCCCCAA
CCCGGAGATTCTGAGCTGCCGCCGCGCGGCAACACAAACGCGGCACGCCGGCCCAACTCG
GTGCAACCTGGAGCAGAGCGCGAGAAGCCCGGGGCCGGCGCAGGAGCCGTGGAGAACTGG
GAGCCGCGCGTATTGCCCTATCACCCCGCACAGCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               200-319, - strand, RNAz p=0.999534

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-319, - strand, RNAz p=0.999534

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               132-300, + strand, RNAmicro p=0.985862

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               132-300, + strand, RNAmicro p=0.985862

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               203-319, DB456967 RIKEN full-length enriched human cDNA library, testis Homo 
(dbj|DB456967.1|), blast E-value=5.04467e-44, identity=94.87% 
               

               
               203-319, 17000424043518 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN260045.1|), blast E-value=5.04467e-44, identity=94.87% 
               

               
               203-319, 17000417981246 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN260052.1|), blast E-value=5.04467e-44, identity=94.87% 
               

               
               203-319, hw06c02.y1 Human primary human ocular pericytes. Unamplified (hw) 
(gb|CN481326.1|), blast E-value=5.04467e-44, identity=94.87% 
               

               
               203-319, AGENCOURT_26528978 NIH_MGC_212 Homo sapiens cDNA clone 
(gb|CO249635.1|), blast E-value=5.04467e-44, identity=94.87% 
               

               
               203-319, 179495 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', 
(gb|DY753767.1|), blast E-value=5.04467e-44, identity=94.87%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               203-319, DB456967 RIKEN full-length enriched human cDNA library, testis Homo 
(dbj|DB456967.1|), blast E-value=5.04467e-44, identity=94.87% 
               

               
               203-319, 17000424043518 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN260045.1|), blast E-value=5.04467e-44, identity=94.87% 
               

               
               203-319, 17000417981246 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN260052.1|), blast E-value=5.04467e-44, identity=94.87% 
               

               
               203-319, hw06c02.y1 Human primary human ocular pericytes. Unamplified (hw) 
(gb|CN481326.1|), blast E-value=5.04467e-44, identity=94.87% 
               

               
               203-319, AGENCOURT_26528978 NIH_MGC_212 Homo sapiens cDNA clone 
(gb|CO249635.1|), blast E-value=5.04467e-44, identity=94.87% 
               

               
               203-319, 179495 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', 
(gb|DY753767.1|), blast E-value=5.04467e-44, identity=94.87%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-516, gnl|bosTau2|chr2 (68776982-68777496)
               

               
               2-516, gnl|Hg17|chr2 (220233992-220233478)
               

               
               2-516, gnl|Mm7|chr1 (75705488-75705012)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-516, gnl|bosTau2|chr2 (68776982-68777496)
               

               
               2-516, gnl|Hg17|chr2 (220233992-220233478)
               

               
               2-516, gnl|Mm7|chr1 (75705488-75705012)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	203-319, DB456967 RIKEN full-length enriched human cDNA library, testis Homo (dbj\|DB456967.1\|), blast E-value=5.04467e-44, identity=94.87%
	203-319, 17000424043518 GRN_EB Homo sapiens cDNA 5', mRNA sequence (gb\|CN260045.1\|), blast E-value=5.04467e-44, identity=94.87%
	203-319, 17000417981246 GRN_EB Homo sapiens cDNA 5', mRNA sequence (gb\|CN260052.1\|), blast E-value=5.04467e-44, identity=94.87%
	203-319, hw06c02.y1 Human primary human ocular pericytes. Unamplified (hw) (gb\|CN481326.1\|), blast E-value=5.04467e-44, identity=94.87%
	203-319, AGENCOURT_26528978 NIH_MGC_212 Homo sapiens cDNA clone (gb\|CO249635.1\|), blast E-value=5.04467e-44, identity=94.87%
	203-319, 179495 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', (gb\|DY753767.1\|), blast E-value=5.04467e-44, identity=94.87%

	2-516, gnl\|bosTau2\|chr2 (68776982-68777496)
	2-516, gnl\|Hg17\|chr2 (220233992-220233478)
	2-516, gnl\|Mm7\|chr1 (75705488-75705012)