Non-Coding RNA Search

Ss1.1-Pig3-SRG8001A03.3

Sequence:


               
               TAGTGGCAACAGTAGGCACAAAGACCTGAAGACAAGAATCAGTTAAGCACTTCAGAAATA
CTGAAACAAGGTTTCCTGTGCTGAGGAAAAGCAGCAGAAAATGAAGCTGGAGAGGTAGTC
GACCAGACCTGAAGAGGGTCATAGGAGCCTGGCAAGAGCAGATTTGCCTCATAAGACAGT
GTGGTTCCCAGACTGGCTTTGCACCAGAAACGCCTGGAACATCCTGGACCCCAACCTCTA
AAAAGTCAATTTCCATAGTTGGGGTGGGGGGCTCAGGATCTTGAGTGCTTATAAAGATAA
GCACATGAGTAGGGTGCAGCCAGGTTTAGGAATTGTGGGCTGGAGGCTGAGGGCAGCCAT
GAAGTACTTTTGAGCAAGGGCGACGTCACATTAGATGTGATTTTAACAAACCCCTTTCTG
ACCAGCCAGTGTGGAAATGGATTATGTTAGATGCTCATGCTGTATGCTCTTATGCCTGTA
GCTTTCCTGCTGTTCAATTCTCACACTGTTTTATATTTGCTTGTTTTGTCTCTGAATAAG
CTGTAAACACCATAAGGGTGGTTCTGGGGTTATCTTGCTAGTGGTATATCCCCAGCAGTA
AGCACGATGCCTGAGACAAAACAGGTACCCAGTAAATAGTTTTTGCATGAATGAATGTAT
GAATGAATGCATTTGTGATGGAGAGAATGGAGACAGATTAGTTAGGGAACTATTGAAAAT
ACCAGGCCTGCTCAAGGGCCAAGGAAGTGGGGATGGATTGGAGGTGATAAGGTGTGAGCT
ATCAAGGGAAGATGATGAACCAGACTTGGTGACTGATTATTGGATATGGAGGGTGACTGA
GGATAGAATGAATAGCTAAGATTCCTACCCTATCTCAGTCACTCTCCTTCCCCATCCATC
TGAATCAGAATCTCCTCCCAGCCTCCTCAGCAACTAGAATTACCCTTTCAAGTTAGGTAA
ATGTTCTGTGTGCTGTGTGGTCTTCCCCCTCCCCCTCCTCCCCCCCCGGCCATTGATTCA
TTCATCCAGTTCAATAAATCTTGGCTGAGCACCTCCTGTGTGCAGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGTGGCAACAGTAGGCACAAAGACCTGAAGACAAGAATCAGTTAAGCACTTCAGAAATA
CTGAAACAAGGTTTCCTGTGCTGAGGAAAAGCAGCAGAAAATGAAGCTGGAGAGGTAGTC
GACCAGACCTGAAGAGGGTCATAGGAGCCTGGCAAGAGCAGATTTGCCTCATAAGACAGT
GTGGTTCCCAGACTGGCTTTGCACCAGAAACGCCTGGAACATCCTGGACCCCAACCTCTA
AAAAGTCAATTTCCATAGTTGGGGTGGGGGGCTCAGGATCTTGAGTGCTTATAAAGATAA
GCACATGAGTAGGGTGCAGCCAGGTTTAGGAATTGTGGGCTGGAGGCTGAGGGCAGCCAT
GAAGTACTTTTGAGCAAGGGCGACGTCACATTAGATGTGATTTTAACAAACCCCTTTCTG
ACCAGCCAGTGTGGAAATGGATTATGTTAGATGCTCATGCTGTATGCTCTTATGCCTGTA
GCTTTCCTGCTGTTCAATTCTCACACTGTTTTATATTTGCTTGTTTTGTCTCTGAATAAG
CTGTAAACACCATAAGGGTGGTTCTGGGGTTATCTTGCTAGTGGTATATCCCCAGCAGTA
AGCACGATGCCTGAGACAAAACAGGTACCCAGTAAATAGTTTTTGCATGAATGAATGTAT
GAATGAATGCATTTGTGATGGAGAGAATGGAGACAGATTAGTTAGGGAACTATTGAAAAT
ACCAGGCCTGCTCAAGGGCCAAGGAAGTGGGGATGGATTGGAGGTGATAAGGTGTGAGCT
ATCAAGGGAAGATGATGAACCAGACTTGGTGACTGATTATTGGATATGGAGGGTGACTGA
GGATAGAATGAATAGCTAAGATTCCTACCCTATCTCAGTCACTCTCCTTCCCCATCCATC
TGAATCAGAATCTCCTCCCAGCCTCCTCAGCAACTAGAATTACCCTTTCAAGTTAGGTAA
ATGTTCTGTGTGCTGTGTGGTCTTCCCCCTCCCCCTCCTCCCCCCCCGGCCATTGATTCA
TTCATCCAGTTCAATAAATCTTGGCTGAGCACCTCCTGTGTGCAGTGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-118, + strand, RNAz p=0.58909

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, + strand, RNAz p=0.58909

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-345, gnl|bosTau2|chrX (541538-541176)
               

               
               1-345, gnl|canFam2|chrX (45081865-45082326)
               

               
               1-345, gnl|hg17|chrX (53285973-53286461)
               

               
               1-345, gnl|Hg17|chrX (53286576-53286244)
               

               
               1-345, gnl|mm7|chrX (146824637-146824207)
               

               
               1-345, gnl|panTro1|chrX (54533952-54534440)
               

               
               1-345, gnl|rheMac2|chrX (51700682-51701167)
               

               
               1-345, gnl|rn3|chrX (41605813-41605377)
               


               
               405-1060, gnl|bosTau2|chrX (541152-540523)
               

               
               405-1060, gnl|Hg17|chrX (53286188-53285499)
               

               
               405-1060, gnl|Mm7|chrX (146824452-146825274)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-345, gnl|bosTau2|chrX (541538-541176)
               

               
               1-345, gnl|canFam2|chrX (45081865-45082326)
               

               
               1-345, gnl|hg17|chrX (53285973-53286461)
               

               
               1-345, gnl|Hg17|chrX (53286576-53286244)
               

               
               1-345, gnl|mm7|chrX (146824637-146824207)
               

               
               1-345, gnl|panTro1|chrX (54533952-54534440)
               

               
               1-345, gnl|rheMac2|chrX (51700682-51701167)
               

               
               1-345, gnl|rn3|chrX (41605813-41605377)
               


               
               405-1060, gnl|bosTau2|chrX (541152-540523)
               

               
               405-1060, gnl|Hg17|chrX (53286188-53285499)
               

               
               405-1060, gnl|Mm7|chrX (146824452-146825274)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lnt (0.142308)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	1-345, gnl\|bosTau2\|chrX (541538-541176)
	1-345, gnl\|canFam2\|chrX (45081865-45082326)
	1-345, gnl\|hg17\|chrX (53285973-53286461)
	1-345, gnl\|Hg17\|chrX (53286576-53286244)
	1-345, gnl\|mm7\|chrX (146824637-146824207)
	1-345, gnl\|panTro1\|chrX (54533952-54534440)
	1-345, gnl\|rheMac2\|chrX (51700682-51701167)
	1-345, gnl\|rn3\|chrX (41605813-41605377)

	405-1060, gnl\|bosTau2\|chrX (541152-540523)
	405-1060, gnl\|Hg17\|chrX (53286188-53285499)
	405-1060, gnl\|Mm7\|chrX (146824452-146825274)