Non-Coding RNA Search

Ss1.1-Pig3-SRG8001A09.5

Sequence:


               
               CACCCTTCCAGCTGCGCAAGCAAAAGCTTGGAGCCAGCTTGAATCGTCTCCGTCACATTT
AACATCCAGTCCATCAGCAAACATTTTTTACCTTTACTCTTCATATCTATCCAGTATCTG
ATCACTTCTCACCACTGGTGCCACTGCCTGAAGGACAAGCCAGTCATCTCTTTCCTAGCT
TATGCAGAATAGCCACCTAGCTGGTCTCTCTGATTTCCTTCCTTACCTGCCTTAGTATAT
TCTCCATCAAAGAAATGATCTCCTTATAACATAAAACAGATCATGTCACCTCTCTGCTCA
TAACCCTTGAAAACATCCCATCATTTCCTGGATGCACACTCATACCCTTAATTCAGTGAA
GCAATTTATAAAGTAACACATTAACATTTCATAGCTCATTTACCTGTGTTTCCTTTCTGA
CCAAGTTTCCCCCTAATACCGGTTCAAACTGGTGAGACTTCAGACAAGTGGTTTCTCAAC
CCTGCCTGCACAATAGAATCATCAGAGGAGCTTCACCAAAGTGCCAATGACCTGGCCCCG
CCCTAGAGACTCTGATTCAATGTATTTTGAGGACAGAGGCACGGCTTGGTTATTTGGTTA
CCATGTCATCAAAGCAGATTAAAAAGGAGGGGGAAAGCTATGTTCCTTCTGCTTGGCTCT
CTTGACAGCTACCAAATTATTTTTTAACCCCAGAAAGAATACTGCTACCCCCAAAATATT
TACTCTTAGTAAATAAAGCATGTTAACTGTCAAGGGGTGGTTGGCCCTTTAAATAGCACG
GCAATGCACAGAAAGACAGTTGGTGGGTCTGTGTGGCCTTCATATAAATGTCAACATCTA
CTTTGGGTCCCAAAATAATTTTTTCTTTTTTCTTTTTTTGGTCTTTTTGCCTTTTCTTGA
ACCACTCCATATGCCATGGATGCAGCCCTAAAAAGCCAAAATAAATAAATAAATAAATAA
ATAAATAAAAATTAAAAAAATACACAGTACTCTTGAGGGTAAATACCCAAATCTAAATAC
AACCTGACACTGTCTCCCTGATTTCTCCCTGGCCTCCAATAATATCGGTTTAAGATACCT
CACTGCCATTTTCCAGGACTTGTCAGAGCCATTGAAGGATGAGATGGATCTGTTCATCCT
AGTTCTCAGAAAGAAGTAGAAGGGCCAGAGGATGGAGGGTGTAGCTTCCTTTAATCTCCT
CCATATTCTTCTTCCAGTCCTGCTAAAGGGAGGGGTGAAATCAGCCCCACAAGAAACTAT
TTTGCCCCCAAGCCCTCCGGGAAAGCCAGTGGGCACTCATCACTAACCCCTATCTGGGCC
ACCCCTGCTAAAACCTCCAATTCCTGGCATTCAACAGAGTGCAACGGTATAAAAAGTCTT
TCTTAGCCATGTAAGTACATTTTAAGAGATGGTTTTGGTGGGGTGGAGAGGAGAGAGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCCTTCCAGCTGCGCAAGCAAAAGCTTGGAGCCAGCTTGAATCGTCTCCGTCACATTT
AACATCCAGTCCATCAGCAAACATTTTTTACCTTTACTCTTCATATCTATCCAGTATCTG
ATCACTTCTCACCACTGGTGCCACTGCCTGAAGGACAAGCCAGTCATCTCTTTCCTAGCT
TATGCAGAATAGCCACCTAGCTGGTCTCTCTGATTTCCTTCCTTACCTGCCTTAGTATAT
TCTCCATCAAAGAAATGATCTCCTTATAACATAAAACAGATCATGTCACCTCTCTGCTCA
TAACCCTTGAAAACATCCCATCATTTCCTGGATGCACACTCATACCCTTAATTCAGTGAA
GCAATTTATAAAGTAACACATTAACATTTCATAGCTCATTTACCTGTGTTTCCTTTCTGA
CCAAGTTTCCCCCTAATACCGGTTCAAACTGGTGAGACTTCAGACAAGTGGTTTCTCAAC
CCTGCCTGCACAATAGAATCATCAGAGGAGCTTCACCAAAGTGCCAATGACCTGGCCCCG
CCCTAGAGACTCTGATTCAATGTATTTTGAGGACAGAGGCACGGCTTGGTTATTTGGTTA
CCATGTCATCAAAGCAGATTAAAAAGGAGGGGGAAAGCTATGTTCCTTCTGCTTGGCTCT
CTTGACAGCTACCAAATTATTTTTTAACCCCAGAAAGAATACTGCTACCCCCAAAATATT
TACTCTTAGTAAATAAAGCATGTTAACTGTCAAGGGGTGGTTGGCCCTTTAAATAGCACG
GCAATGCACAGAAAGACAGTTGGTGGGTCTGTGTGGCCTTCATATAAATGTCAACATCTA
CTTTGGGTCCCAAAATAATTTTTTCTTTTTTCTTTTTTTGGTCTTTTTGCCTTTTCTTGA
ACCACTCCATATGCCATGGATGCAGCCCTAAAAAGCCAAAATAAATAAATAAATAAATAA
ATAAATAAAAATTAAAAAAATACACAGTACTCTTGAGGGTAAATACCCAAATCTAAATAC
AACCTGACACTGTCTCCCTGATTTCTCCCTGGCCTCCAATAATATCGGTTTAAGATACCT
CACTGCCATTTTCCAGGACTTGTCAGAGCCATTGAAGGATGAGATGGATCTGTTCATCCT
AGTTCTCAGAAAGAAGTAGAAGGGCCAGAGGATGGAGGGTGTAGCTTCCTTTAATCTCCT
CCATATTCTTCTTCCAGTCCTGCTAAAGGGAGGGGTGAAATCAGCCCCACAAGAAACTAT
TTTGCCCCCAAGCCCTCCGGGAAAGCCAGTGGGCACTCATCACTAACCCCTATCTGGGCC
ACCCCTGCTAAAACCTCCAATTCCTGGCATTCAACAGAGTGCAACGGTATAAAAAGTCTT
TCTTAGCCATGTAAGTACATTTTAAGAGATGGTTTTGGTGGGGTGGAGAGGAGAGAGGAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-322, gnl|bosTau2|chr6 (5874486-5874170)
               

               
               1-322, gnl|Hg17|chr4 (109807122-109807442)
               


               
               340-770, gnl|bosTau2|chr6 (5872001-5871571)
               

               
               340-770, gnl|Hg17|chr4 (109808903-109809345)
               


               
               1021-1438, gnl|bosTau2|chr6 (5870851-5870442)
               

               
               1021-1438, gnl|Hg17|chr4 (109809750-109810179)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-322, gnl|bosTau2|chr6 (5874486-5874170)
               

               
               1-322, gnl|Hg17|chr4 (109807122-109807442)
               


               
               340-770, gnl|bosTau2|chr6 (5872001-5871571)
               

               
               340-770, gnl|Hg17|chr4 (109808903-109809345)
               


               
               1021-1438, gnl|bosTau2|chr6 (5870851-5870442)
               

               
               1021-1438, gnl|Hg17|chr4 (109809750-109810179)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               thg (0.126791)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	1-322, gnl\|bosTau2\|chr6 (5874486-5874170)
	1-322, gnl\|Hg17\|chr4 (109807122-109807442)

	340-770, gnl\|bosTau2\|chr6 (5872001-5871571)
	340-770, gnl\|Hg17\|chr4 (109808903-109809345)

	1021-1438, gnl\|bosTau2\|chr6 (5870851-5870442)
	1021-1438, gnl\|Hg17\|chr4 (109809750-109810179)