Ss1.1-Pig3-SRG8001B11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAAGTTCTCGTACGCACTGGCCCGAGGAGGCTGCATGCACTTTCACTGCACCCAGTGCC GCCACCAGTTCTGCAGTGGCTGCTACAATGCCTTTTATGCCAAGAATAAATGTCCAGACC CTAACTGCAGGGTGAAGAAGTCCCTGCATGGCCACCACCCTCGAGACTGCCTCTTCTACC TGCGGGACTGGACTGCTCGCCGGCTCCAGAAGCTGCTGCAGGACAATAACGTCATGTTCA ACACAGAACCCCCAGTAGGGGCCCGGGCAGTGCCTGGAGGTGGCTGCCGAGTGATGGAGC AGAAGGAGGTGCCCAATGGCTTCCGGGACGAAGCCTGTGGCAAGGAGACTCCTGCTGGCT ATGCTGGCCTCTGCCAGGCACACTACAAAGAATATCTTGTGAGCCTCATCAATGCCCACT CTCTGGACCCAGCCACCCTGTATGAGGTGGAGGAGCTGGAGACAGCTGCCGAGCGCTACC TGCACATGCACCCCCAGCCGCTGCCTGGGGAGGATCCCCCAACCTATCACGCACGCTTAT TGCAGAAGCTGATAGAAGAGGTGCCCTTGGGACAGAGTATCCCCCGCAGGAGGAAGTAGC TGAGGGCGAGGGTCCCTTGGTCCGACTTCCTCAGGAGCAGCTCCAGCACTAATAAAGAGG CATTTCCTTGCCAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAAGTTCTCGTACGCACTGGCCCGAGGAGGCTGCATGCACTTTCACTGCACCCAGTGCC GCCACCAGTTCTGCAGTGGCTGCTACAATGCCTTTTATGCCAAGAATAAATGTCCAGACC CTAACTGCAGGGTGAAGAAGTCCCTGCATGGCCACCACCCTCGAGACTGCCTCTTCTACC TGCGGGACTGGACTGCTCGCCGGCTCCAGAAGCTGCTGCAGGACAATAACGTCATGTTCA ACACAGAACCCCCAGTAGGGGCCCGGGCAGTGCCTGGAGGTGGCTGCCGAGTGATGGAGC AGAAGGAGGTGCCCAATGGCTTCCGGGACGAAGCCTGTGGCAAGGAGACTCCTGCTGGCT ATGCTGGCCTCTGCCAGGCACACTACAAAGAATATCTTGTGAGCCTCATCAATGCCCACT CTCTGGACCCAGCCACCCTGTATGAGGTGGAGGAGCTGGAGACAGCTGCCGAGCGCTACC TGCACATGCACCCCCAGCCGCTGCCTGGGGAGGATCCCCCAACCTATCACGCACGCTTAT TGCAGAAGCTGATAGAAGAGGTGCCCTTGGGACAGAGTATCCCCCGCAGGAGGAAGTAGC TGAGGGCGAGGGTCCCTTGGTCCGACTTCCTCAGGAGCAGCTCCAGCACTAATAAAGAGG CATTTCCTTGCCAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-107, - strand, RNAz p=0.507073 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-107, - strand, RNAz p=0.507073 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 1-107, gnl|bosTau2|chr10 (12352872-12352766) | |
| 1-107, gnl|canFam2|chr8 (7155269-7155407) | |
| 1-107, gnl|danRer3|chr24 (3732933-3733073) | |
| 1-107, gnl|dasNov1|scaffold_46711 (3720-3582) | |
| 1-107, gnl|echTel1|scaffold_316077 (38145-38283) | |
| 1-107, gnl|fr1|chrUn (161125538-161125660) | |
| 1-107, gnl|hg17|chr14 (23696555-23696693) | |
| 1-107, gnl|Hg17|chr14 (23696581-23696687) | |
| 1-107, gnl|loxAfr1|scaffold_1306 (128638-128776) | |
| 1-107, gnl|mm7|chr14 (50468609-50468751) | |
| 1-107, gnl|Mm7|chr14 (50468639-50468745) | |
| 1-107, gnl|monDom2|scaffold_12 (25608853-25608715) | |
| 1-107, gnl|panTro1|chr15 (22598225-22598363) | |
| 1-107, gnl|rheMac2|chr7 (87051273-87051411) | |
| 1-107, gnl|rn3|chr15 (33752432-33752569) | |
| 1-107, gnl|tetNig1|chrUn_random (132818861-132818983) | |
| 1-107, gnl|xenTro1|scaffold_53 (477571-477700) | |
| 108-222, gnl|bosTau2|chr10 (12352499-12352385) | |
| 108-222, gnl|canFam2|chr2 (20372017-20371912) | |
| 108-222, gnl|dasNov1|scaffold_46711 (3193-3283) | |
| 108-222, gnl|hg17|chr10 (28972350-28972453) | |
| 108-222, gnl|Hg17|chr14 (23696947-23697061) | |
| 108-222, gnl|Mm7|chr14 (50468990-50469104) | |
| 108-222, gnl|panTro1|chr8 (29319047-29319150) | |
| 108-222, gnl|rheMac2|chr1 (24403739-24403842) | |
| 108-222, gnl|rn3|chr15 (33752946-33752838) | |
| 377-545, gnl|bosTau2|chr10 (12351157-12350989) | |
| 377-545, gnl|Hg17|chr14 (23699288-23699456) | |
| 377-545, gnl|Mm7|chr14 (50470604-50470772) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-107, gnl|bosTau2|chr10 (12352872-12352766) | |
| 1-107, gnl|canFam2|chr8 (7155269-7155407) | |
| 1-107, gnl|danRer3|chr24 (3732933-3733073) | |
| 1-107, gnl|dasNov1|scaffold_46711 (3720-3582) | |
| 1-107, gnl|echTel1|scaffold_316077 (38145-38283) | |
| 1-107, gnl|fr1|chrUn (161125538-161125660) | |
| 1-107, gnl|hg17|chr14 (23696555-23696693) | |
| 1-107, gnl|Hg17|chr14 (23696581-23696687) | |
| 1-107, gnl|loxAfr1|scaffold_1306 (128638-128776) | |
| 1-107, gnl|mm7|chr14 (50468609-50468751) | |
| 1-107, gnl|Mm7|chr14 (50468639-50468745) | |
| 1-107, gnl|monDom2|scaffold_12 (25608853-25608715) | |
| 1-107, gnl|panTro1|chr15 (22598225-22598363) | |
| 1-107, gnl|rheMac2|chr7 (87051273-87051411) | |
| 1-107, gnl|rn3|chr15 (33752432-33752569) | |
| 1-107, gnl|tetNig1|chrUn_random (132818861-132818983) | |
| 1-107, gnl|xenTro1|scaffold_53 (477571-477700) | |
| 108-222, gnl|bosTau2|chr10 (12352499-12352385) | |
| 108-222, gnl|canFam2|chr2 (20372017-20371912) | |
| 108-222, gnl|dasNov1|scaffold_46711 (3193-3283) | |
| 108-222, gnl|hg17|chr10 (28972350-28972453) | |
| 108-222, gnl|Hg17|chr14 (23696947-23697061) | |
| 108-222, gnl|Mm7|chr14 (50468990-50469104) | |
| 108-222, gnl|panTro1|chr8 (29319047-29319150) | |
| 108-222, gnl|rheMac2|chr1 (24403739-24403842) | |
| 108-222, gnl|rn3|chr15 (33752946-33752838) | |
| 377-545, gnl|bosTau2|chr10 (12351157-12350989) | |
| 377-545, gnl|Hg17|chr14 (23699288-23699456) | |
| 377-545, gnl|Mm7|chr14 (50470604-50470772) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| mas (0.210305) | |
| ill (0.175593) | |
| cje (0.165235) | |
| nbm (0.0993246) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| ill (0.175593) | |
| cje (0.165235) | |
| nbm (0.0993246) |