Non-Coding RNA Search

Ss1.1-Pig3-SRG8001C16.3

Sequence:


               
               AAAGACCCACAGCATCCATCTATGAGCAACACATGGTGAGTCCCATGGTTCATGTCTATA
GAAGCCCATCTTTTGGCCCAAAGCATCTGGAAGAAGAAGAAGAAAGGAATGAGAAAGAGG
GAAGTGAATCAAAACATCTCCAAAGAAGTCTTTTAGAACGAGAAAATCATTCGCCACTCA
CAGGGTCAAATATGAAGTACAAAACCACTGACCAATCCACTGAATTTTTATCCTTCCAGG
ATGCCAGTTCATTATATAGGAACATTTTAGAGAAAGAAAGAGAACTTCAGCAACTGGGAA
TCACAGAATACCTAAGGAAAAACATTGCTCAACTTCAGCCTGATATGGAGGTACATTATC
CAGGAGCCCATGAAGAGTTAAAGTTGATGGAGACATTAATGTACTCAAGACCAAGAAAGG
TATTAGTGGAACAGACTAAAAATGAGTATTTTGAGCTGAAAGCTAATTTACATGCTGAAC
CTGACTACTTAGAAGTCCTGGAGCAGCAAACATAGAGAGTTTCAGGGCTTTTGCAGAAAT
GCTGTGATTCTGTCTTAAGTCCAAACCTTGTAAATAAGTGCCTTATATGTGTGTCATCAA
TCAGAACTTAAGCACAGCAGTAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGACCCACAGCATCCATCTATGAGCAACACATGGTGAGTCCCATGGTTCATGTCTATA
GAAGCCCATCTTTTGGCCCAAAGCATCTGGAAGAAGAAGAAGAAAGGAATGAGAAAGAGG
GAAGTGAATCAAAACATCTCCAAAGAAGTCTTTTAGAACGAGAAAATCATTCGCCACTCA
CAGGGTCAAATATGAAGTACAAAACCACTGACCAATCCACTGAATTTTTATCCTTCCAGG
ATGCCAGTTCATTATATAGGAACATTTTAGAGAAAGAAAGAGAACTTCAGCAACTGGGAA
TCACAGAATACCTAAGGAAAAACATTGCTCAACTTCAGCCTGATATGGAGGTACATTATC
CAGGAGCCCATGAAGAGTTAAAGTTGATGGAGACATTAATGTACTCAAGACCAAGAAAGG
TATTAGTGGAACAGACTAAAAATGAGTATTTTGAGCTGAAAGCTAATTTACATGCTGAAC
CTGACTACTTAGAAGTCCTGGAGCAGCAAACATAGAGAGTTTCAGGGCTTTTGCAGAAAT
GCTGTGATTCTGTCTTAAGTCCAAACCTTGTAAATAAGTGCCTTATATGTGTGTCATCAA
TCAGAACTTAAGCACAGCAGTAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|52545620|emb|CAB70783.3|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|52545620|emb|CAB70783.3|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               321-440, + strand, RNAz p=0.561042

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               321-440, + strand, RNAz p=0.561042

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-623, gnl|bosTau2|chr29 (15334571-15333958)
               

               
               1-623, gnl|Hg17|chr13 (85266633-85266005)
               

               
               1-623, gnl|Mm7|chr14 (105152162-105151537)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-623, gnl|bosTau2|chr29 (15334571-15333958)
               

               
               1-623, gnl|Hg17|chr13 (85266633-85266005)
               

               
               1-623, gnl|Mm7|chr14 (105152162-105151537)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fat (0.294855)
               

               
               pty (0.142714)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.294855)
               

               
               pty (0.142714)
               

               
               jej (0.0989218)

	1-623, gnl\|bosTau2\|chr29 (15334571-15333958)
	1-623, gnl\|Hg17\|chr13 (85266633-85266005)
	1-623, gnl\|Mm7\|chr14 (105152162-105151537)