Ss1.1-Pig3-SRG8001C19.3
|
CTCTGGAGACTGCAGCAGCGACCTTTCCGTCTGCGACTCCTCTGTGTAAAGACTCTCTGG
TGTTCAAAGGACGACATCGCTGGCTCTTGACCTGCTGAGAAGGAGGGCGTGGTTGGCTGG
AGGGTAGGGTGGCGCCTTGGGTAGTCTGGTGATGGGACGTGTCTGTAAGGGGAAGATGAG
CACTTTGGTGGTTCTCGAGGGAAAGATGACCCTGCGGAGATGGTCATTTCCTTGGGCTCC
CGTCCCCCTGGGCGAGGGGGTTGTGTCATTCACGTGTGGTGGCTCTTCAGCAGGGGTGGA
GGGGATGGCACTTACCCCGAAGGGAGCACGGGCTCCTCCTCAGTGACCCCACCCGGGGGG
CGCCTTGGCCCCACCGCCGTCTCCAGAGCACCTGCCACTGAGCCCATCAGCCCAGGCCGC
GCACAGTCCTGTCCCAGCAGCAGAGGCCTGGCTCCCTCCAGGCCTGCCTCTGGCCCTGGC
ATCTGTGGGTGTCACCAAGCACGCTCCTGGCACCTTGTTAATAAGTAAGCGCTCACCGTC
AGGACGGGGGTGGCAGAGAGGCTGCCTGGAGGAAACTGAATGGCACGTGTTTAAACTGAC
CAGCGATGGTGTAGAAAGAGAAGAAGCGAGAAAGGCAAGAAGTGGTGTAAATGCTCTCGA
TTTTTTATTGAACCGAATTATTTTGGGGGAAGCGATTACCTGTTGCTTAGCCTATGTAGA
GTTGTACTCTGTATTTATGAGACCTCTGCTCACAGATGATAAATTATGTACATACACGAA
TAAATTCTGTGTTTGGTTCGGCACTCCCCTCACTCCTGCGGCCGCCCCCGCCTTGGCCTG
TGCACCCCAGGCTCCTTGAGGCCCGTGGACACACTGCTCGGAGCGCAGGTGCCGGGCGCT
GGGCTCACAGCCCGAGAGCTCCTCTGCCTTCCCTTCCCCCGCCCCACCCCATCCCACCTG
GAAGAGCCCGGAGACATTCAGGCCCATCTGGAAGTCCCCCTAAAGGCATTCGCCACCTTG
ACAAGCCTGACCGGCCCTCCCTAGCCGTGGGGTAAAAGGATGAAGCTGCCCGCTTGGCTC
ACGTCATTTCCCGGTCTTGGTGATAAGCTGCTTTTAGCTTTGACCAAGGCCAACCGCAGC
CCAGCTGTTTTCAGGGCGCTTTCCTTGTTAGCAGTGTAGCATGTCTTTCCTTTCCCTTCT
TTTCCCCCTGCCTCTGCTCGTGGTTAACACGCTTCTCCCTCAGGGAGCCTAATGAGGTTT
TAATATAATCTGAAAATAAAGCGCTGAAGTGAAGTTGGTGAAAACTCGTTCCGGGTCTCA
TTTGGCGCCTTCCACCCCGAGGACTGTAAGGGAAGG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTCTGGAGACTGCAGCAGCGACCTTTCCGTCTGCGACTCCTCTGTGTAAAGACTCTCTGG
TGTTCAAAGGACGACATCGCTGGCTCTTGACCTGCTGAGAAGGAGGGCGTGGTTGGCTGG
AGGGTAGGGTGGCGCCTTGGGTAGTCTGGTGATGGGACGTGTCTGTAAGGGGAAGATGAG
CACTTTGGTGGTTCTCGAGGGAAAGATGACCCTGCGGAGATGGTCATTTCCTTGGGCTCC
CGTCCCCCTGGGCGAGGGGGTTGTGTCATTCACGTGTGGTGGCTCTTCAGCAGGGGTGGA
GGGGATGGCACTTACCCCGAAGGGAGCACGGGCTCCTCCTCAGTGACCCCACCCGGGGGG
CGCCTTGGCCCCACCGCCGTCTCCAGAGCACCTGCCACTGAGCCCATCAGCCCAGGCCGC
GCACAGTCCTGTCCCAGCAGCAGAGGCCTGGCTCCCTCCAGGCCTGCCTCTGGCCCTGGC
ATCTGTGGGTGTCACCAAGCACGCTCCTGGCACCTTGTTAATAAGTAAGCGCTCACCGTC
AGGACGGGGGTGGCAGAGAGGCTGCCTGGAGGAAACTGAATGGCACGTGTTTAAACTGAC
CAGCGATGGTGTAGAAAGAGAAGAAGCGAGAAAGGCAAGAAGTGGTGTAAATGCTCTCGA
TTTTTTATTGAACCGAATTATTTTGGGGGAAGCGATTACCTGTTGCTTAGCCTATGTAGA
GTTGTACTCTGTATTTATGAGACCTCTGCTCACAGATGATAAATTATGTACATACACGAA
TAAATTCTGTGTTTGGTTCGGCACTCCCCTCACTCCTGCGGCCGCCCCCGCCTTGGCCTG
TGCACCCCAGGCTCCTTGAGGCCCGTGGACACACTGCTCGGAGCGCAGGTGCCGGGCGCT
GGGCTCACAGCCCGAGAGCTCCTCTGCCTTCCCTTCCCCCGCCCCACCCCATCCCACCTG
GAAGAGCCCGGAGACATTCAGGCCCATCTGGAAGTCCCCCTAAAGGCATTCGCCACCTTG
ACAAGCCTGACCGGCCCTCCCTAGCCGTGGGGTAAAAGGATGAAGCTGCCCGCTTGGCTC
ACGTCATTTCCCGGTCTTGGTGATAAGCTGCTTTTAGCTTTGACCAAGGCCAACCGCAGC
CCAGCTGTTTTCAGGGCGCTTTCCTTGTTAGCAGTGTAGCATGTCTTTCCTTTCCCTTCT
TTTCCCCCTGCCTCTGCTCGTGGTTAACACGCTTCTCCCTCAGGGAGCCTAATGAGGTTT
TAATATAATCTGAAAATAAAGCGCTGAAGTGAAGTTGGTGAAAACTCGTTCCGGGTCTCA
TTTGGCGCCTTCCACCCCGAGGACTGTAAGGGAAGG
|
|
486-826, gnl|bosTau2|chr13 (39314530-39314185) |
|
486-826, gnl|canFam2|chr24 (46138968-46139346) |
|
486-826, gnl|dasNov1|scaffold_112050 (7157-6780) |
|
486-826, gnl|echTel1|scaffold_282038 (106269-106612) |
|
486-826, gnl|galGal2|chr20 (10735699-10735336) |
|
486-826, gnl|hg17|chr20 (56368802-56369182) |
|
486-826, gnl|Hg17|chr20 (56368811-56369153) |
|
486-826, gnl|loxAfr1|scaffold_15629 (20199-20569) |
|
486-826, gnl|mm7|chr2 (173446030-173446443) |
|
486-826, gnl|Mm7|chr2 (173446036-173446416) |
|
486-826, gnl|monDom2|scaffold_1 (172757344-172757698) |
|
486-826, gnl|oryCun1|scaffold_196763 (4832-4450) |
|
486-826, gnl|panTro1|chr21 (59355672-59356052) |
|
486-826, gnl|rheMac2|chr10 (6160446-6160065) |
|
486-826, gnl|rn3|chr3 (164504163-164504555) |
| |
|
979-1356, gnl|bosTau2|chr13 (39314049-39313684) |
|
979-1356, gnl|Hg17|chr20 (56369289-56369654) |
|
979-1356, gnl|Mm7|chr2 (173446536-173446935) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
486-826, gnl|bosTau2|chr13 (39314530-39314185) |
|
486-826, gnl|canFam2|chr24 (46138968-46139346) |
|
486-826, gnl|dasNov1|scaffold_112050 (7157-6780) |
|
486-826, gnl|echTel1|scaffold_282038 (106269-106612) |
|
486-826, gnl|galGal2|chr20 (10735699-10735336) |
|
486-826, gnl|hg17|chr20 (56368802-56369182) |
|
486-826, gnl|Hg17|chr20 (56368811-56369153) |
|
486-826, gnl|loxAfr1|scaffold_15629 (20199-20569) |
|
486-826, gnl|mm7|chr2 (173446030-173446443) |
|
486-826, gnl|Mm7|chr2 (173446036-173446416) |
|
486-826, gnl|monDom2|scaffold_1 (172757344-172757698) |
|
486-826, gnl|oryCun1|scaffold_196763 (4832-4450) |
|
486-826, gnl|panTro1|chr21 (59355672-59356052) |
|
486-826, gnl|rheMac2|chr10 (6160446-6160065) |
|
486-826, gnl|rn3|chr3 (164504163-164504555) |
| |
|
979-1356, gnl|bosTau2|chr13 (39314049-39313684) |
|
979-1356, gnl|Hg17|chr20 (56369289-56369654) |
|
979-1356, gnl|Mm7|chr2 (173446536-173446935) |
|
csp (0.322373) |
|
ill (0.175593) |
|
cje (0.165235) |
|
pty (0.142714) |
|
hlv (0.139256) |
|
ute (0.132784) |
|
cov (0.132153) |
|
ese (0.126502) |
|
cly (0.120642) |
|
eru (0.120048) |
|
jca (0.11396) |
|
csp (0.322373) |
|
ill (0.175593) |
|
cje (0.165235) |
|
pty (0.142714) |
|
hlv (0.139256) |
|
ute (0.132784) |
|
cov (0.132153) |
|
ese (0.126502) |
|
cly (0.120642) |
|
eru (0.120048) |
|
jca (0.11396) |
