Non-Coding RNA Search

Ss1.1-Pig3-SRG8001D11.3

Sequence:


               
               ATCGACAAGGCTGGCCAGCTCACTAGCGAAAAGGACACACTGATCCTGGTCACGGCCGAC
CACTCTCATGTCTTCTCTTTTGGTGGCTACACATTGCGTGGAAGCTCCGTTTTTGGCCTG
GCCCCCAGCAAGGCCTTGGATCTCAAGCCATATACCTCCATCCTTTATGGCAACGGCCCG
GGCTATGCTCTGAATGGAAGCTCAAGACCCAGCGTCACTGGGAGCGAGATTAGCGACCGC
ATGTACCGGCAGCAGGCGGCCGTGCCCCTGGAAAGCGAGACCCACGGCGGCGAGGACGTG
GCGGTGTTCGCGCGCGGCCCGCAGGCGCACCTGGTGCACGGCGTGCAAGAGCAGAGCTTC
GTGGCGCACGTGATGGCCTTCGCCGCCTGCCTGGAGCCCTACACCGACTGCAACTTGCGG
CCGCCAGAAAGTCTTTCCAACGCCGCACACCCCAGGCCGGTGGCCTGCCCACCTTCGCTG
CTGCTGCTGCTGGCGGGGGCACTGCTGCTGCTGCTGATGATGCCCGCCCTGCACTGACCC
CGCCCATCCCAGGCCAAGGCGGCTCCTGCTCCCCTGCCCGGAAGCCACCAGCTCAAGCCC
CATATGGGCTGCCACCTCAAGTCCCCACCCCGCAGTCCCATCTCAGCTGCCACTCTCAGA
ACCCCCATCCAGGACTCTCAGCCAGACCTTGCCCTCTCAACAATAAAGGAACCTCAGGAT
CCTCGACGGACCTGGCACCCCGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCGACAAGGCTGGCCAGCTCACTAGCGAAAAGGACACACTGATCCTGGTCACGGCCGAC
CACTCTCATGTCTTCTCTTTTGGTGGCTACACATTGCGTGGAAGCTCCGTTTTTGGCCTG
GCCCCCAGCAAGGCCTTGGATCTCAAGCCATATACCTCCATCCTTTATGGCAACGGCCCG
GGCTATGCTCTGAATGGAAGCTCAAGACCCAGCGTCACTGGGAGCGAGATTAGCGACCGC
ATGTACCGGCAGCAGGCGGCCGTGCCCCTGGAAAGCGAGACCCACGGCGGCGAGGACGTG
GCGGTGTTCGCGCGCGGCCCGCAGGCGCACCTGGTGCACGGCGTGCAAGAGCAGAGCTTC
GTGGCGCACGTGATGGCCTTCGCCGCCTGCCTGGAGCCCTACACCGACTGCAACTTGCGG
CCGCCAGAAAGTCTTTCCAACGCCGCACACCCCAGGCCGGTGGCCTGCCCACCTTCGCTG
CTGCTGCTGCTGGCGGGGGCACTGCTGCTGCTGCTGATGATGCCCGCCCTGCACTGACCC
CGCCCATCCCAGGCCAAGGCGGCTCCTGCTCCCCTGCCCGGAAGCCACCAGCTCAAGCCC
CATATGGGCTGCCACCTCAAGTCCCCACCCCGCAGTCCCATCTCAGCTGCCACTCTCAGA
ACCCCCATCCAGGACTCTCAGCCAGACCTTGCCCTCTCAACAATAAAGGAACCTCAGGAT
CCTCGACGGACCTGGCACCCCGAA

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-116, gnl|bosTau2|chr2 (72479329-72479444)
               

               
               1-116, gnl|Hg17|chr2 (233099213-233099328)
               

               
               1-116, gnl|Mm7|chr1 (86970876-86970989)
               


               
               235-702, gnl|bosTau2|chr2 (72479891-72480356)
               

               
               235-702, gnl|Hg17|chr2 (233099791-233100228)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-116, gnl|bosTau2|chr2 (72479329-72479444)
               

               
               1-116, gnl|Hg17|chr2 (233099213-233099328)
               

               
               1-116, gnl|Mm7|chr1 (86970876-86970989)
               


               
               235-702, gnl|bosTau2|chr2 (72479891-72480356)
               

               
               235-702, gnl|Hg17|chr2 (233099791-233100228)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	1-116, gnl\|bosTau2\|chr2 (72479329-72479444)
	1-116, gnl\|Hg17\|chr2 (233099213-233099328)
	1-116, gnl\|Mm7\|chr1 (86970876-86970989)

	235-702, gnl\|bosTau2\|chr2 (72479891-72480356)
	235-702, gnl\|Hg17\|chr2 (233099791-233100228)