Ss1.1-Pig3-SRG8001D13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGTCCTAGAAGAAGTGGACTGGCTTATAACCAAGCTTAAGGGACAAGTGAGCCAAGAAA TCACACCAGAAGAGGCCTCTTCTCAGACAACTCTCCCAAGTCATCCCATTGAGAAAGCCA TCATCATACAACTGGGAACTCTGCTTACCTTTTTCCATGAGCTAGTGCAGACGGCTCTGC CATCGGGCAGCTGTGTGGAAACCTTGTTAAAGGACCTTTGCAAGATGTACACCATCCTCA CAGCACTTGTCAGATACTATCTCCAGGTGTGTCAGCGGTCTGGAGGAATTCCGAAAAATA TGGAAAAGCTGGTGAAGCTCTCAGGTTCACATCTGACCCCTCTGTGCTATTCTTTCATTT CCTACATGCAGAACAAGAAGAGTAAGAGCCTAAAACATACGGGAGAAAAGAAGGAGAAAG CCGCTGCGGGTGCCTCGGCCGTGGCCAGAGTTCTTCGGGAAACCAAGCCGATCCCTAATC TCATCTTTGCCATCGAACAGTATGAAAAATTTCTCATCCACCTTTCTAAGAGATCCAAGG TGAACCTGATGCAGCACATAAAGCTCAGCACCTCCCGAGACTTCAAGATCAAAGGGAACA TCCTGGACATGGTTCTTCGAGAGGATGAGGATGAAAATGAAGAGGGTACCTCATCAGAGC ATGAGGGACAGAACAAAGAACCAGCCAAGAAGAAAAGGAGAAAAGAAATGAAATGCCTGA GTTAATGGGAACTTTGGGGCTTCTGCTTGCTTTTTACCCAATAAGCAAAAACGCCCCCTT GTCCTACAGCCTGCACCAAGGTTGGCATCTTGGTTCTGAACCCACTGAACTCAACTGCAC CTTCAGTTGGAGGCAGTCGTTCTTGGCGGGTCCCACTACTGAAAAAGGACTGGCCTAAGG CCAGCCATTCTGCCAAAAGCACAGCTGAAAGCCTGAGTTTAGAGCCTGCACCGCCCCAAT GAAGCTCCACGGGAGCAAATTCAGAGCCTCCAGGCAGAGCTATGGTCCAGGCTGGCTTCG TTTTTCCAAGGAGCCTTTGGTGAGTTCAATTATCTGGTAAATATCCAGTGCTTCACCTGG AAAACAGTGCAATCTCTTTTCCATCCCAGTTGGGTTGGAAGGGGTTTTACAATCCATGGT AGGAGCATCATGTTAAAAAGGATGAATATCAACTGCACTGAAAAAGGCGACTGACTGGGG CAAGTCATTCAGACCCAGCTTGTAGGCAAACATGCACCTGGTCAAGAGGTTGGTGACCTG CAGGGCAAGGGCGGCACGGTAGCGGTCCTCCTCCCGCACCAGGTAGCGAACCTCGTCATG GATGCTGATGCAGAAGCGCCCATCAATGGCAAATTCCTCGAACAGCCACTTCATGGCCAC CAGCATGAGGTGTAAGTAGTCCACAGCTGAGCTTTGCACCACCCAGTTCACGCGGCTGGT CATAAACTCCCCCTGGACAGTGGAGGGCTCCAGGGCTCGGCTGATGCGGCAGCCCAGCAC CGGCGTACGTGGCGTGTCAGACGTGGCAATGCTCTCCAGCTTATTGAACATTTCTGACTC TGTGCCCCCCGTCCACGCTCGTTCAGCAACCACCTCCCACTTCTTCCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGTCCTAGAAGAAGTGGACTGGCTTATAACCAAGCTTAAGGGACAAGTGAGCCAAGAAA TCACACCAGAAGAGGCCTCTTCTCAGACAACTCTCCCAAGTCATCCCATTGAGAAAGCCA TCATCATACAACTGGGAACTCTGCTTACCTTTTTCCATGAGCTAGTGCAGACGGCTCTGC CATCGGGCAGCTGTGTGGAAACCTTGTTAAAGGACCTTTGCAAGATGTACACCATCCTCA CAGCACTTGTCAGATACTATCTCCAGGTGTGTCAGCGGTCTGGAGGAATTCCGAAAAATA TGGAAAAGCTGGTGAAGCTCTCAGGTTCACATCTGACCCCTCTGTGCTATTCTTTCATTT CCTACATGCAGAACAAGAAGAGTAAGAGCCTAAAACATACGGGAGAAAAGAAGGAGAAAG CCGCTGCGGGTGCCTCGGCCGTGGCCAGAGTTCTTCGGGAAACCAAGCCGATCCCTAATC TCATCTTTGCCATCGAACAGTATGAAAAATTTCTCATCCACCTTTCTAAGAGATCCAAGG TGAACCTGATGCAGCACATAAAGCTCAGCACCTCCCGAGACTTCAAGATCAAAGGGAACA TCCTGGACATGGTTCTTCGAGAGGATGAGGATGAAAATGAAGAGGGTACCTCATCAGAGC ATGAGGGACAGAACAAAGAACCAGCCAAGAAGAAAAGGAGAAAAGAAATGAAATGCCTGA GTTAATGGGAACTTTGGGGCTTCTGCTTGCTTTTTACCCAATAAGCAAAAACGCCCCCTT GTCCTACAGCCTGCACCAAGGTTGGCATCTTGGTTCTGAACCCACTGAACTCAACTGCAC CTTCAGTTGGAGGCAGTCGTTCTTGGCGGGTCCCACTACTGAAAAAGGACTGGCCTAAGG CCAGCCATTCTGCCAAAAGCACAGCTGAAAGCCTGAGTTTAGAGCCTGCACCGCCCCAAT GAAGCTCCACGGGAGCAAATTCAGAGCCTCCAGGCAGAGCTATGGTCCAGGCTGGCTTCG TTTTTCCAAGGAGCCTTTGGTGAGTTCAATTATCTGGTAAATATCCAGTGCTTCACCTGG AAAACAGTGCAATCTCTTTTCCATCCCAGTTGGGTTGGAAGGGGTTTTACAATCCATGGT AGGAGCATCATGTTAAAAAGGATGAATATCAACTGCACTGAAAAAGGCGACTGACTGGGG CAAGTCATTCAGACCCAGCTTGTAGGCAAACATGCACCTGGTCAAGAGGTTGGTGACCTG CAGGGCAAGGGCGGCACGGTAGCGGTCCTCCTCCCGCACCAGGTAGCGAACCTCGTCATG GATGCTGATGCAGAAGCGCCCATCAATGGCAAATTCCTCGAACAGCCACTTCATGGCCAC CAGCATGAGGTGTAAGTAGTCCACAGCTGAGCTTTGCACCACCCAGTTCACGCGGCTGGT CATAAACTCCCCCTGGACAGTGGAGGGCTCCAGGGCTCGGCTGATGCGGCAGCCCAGCAC CGGCGTACGTGGCGTGTCAGACGTGGCAATGCTCTCCAGCTTATTGAACATTTCTGACTC TGTGCCCCCCGTCCACGCTCGTTCAGCAACCACCTCCCACTTCTTCCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 139-997, - strand, RNAz p=0.984181 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 139-997, - strand, RNAz p=0.984181 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 67-256, gnl|bosTau2|chr21 (15898950-15898761) | |
| 67-256, gnl|Hg17|chr15 (87650239-87650428) | |
| 67-256, gnl|Mm7|chr7 (75312963-75313152) | |
| 643-1093, gnl|bosTau2|chr21 (15891910-15891467) | |
| 643-1093, gnl|Hg17|chr15 (87660630-87661080) | |
| 643-1093, gnl|Mm7|chr7 (75317929-75318346) | |
| 1236-1448, gnl|bosTau2|chr21 (15890018-15889806) | |
| 1236-1448, gnl|canFam2|chr3 (55220223-55220461) | |
| 1236-1448, gnl|danRer3|chr9 (1544030-1543809) | |
| 1236-1448, gnl|echTel1|scaffold_295326 (3252-3016) | |
| 1236-1448, gnl|fr1|chrUn (166043211-166043450) | |
| 1236-1448, gnl|galGal2|chr10 (13511308-13511055) | |
| 1236-1448, gnl|hg17|chr15 (87662766-87663004) | |
| 1236-1448, gnl|Hg17|chr15 (87662774-87662986) | |
| 1236-1448, gnl|loxAfr1|scaffold_4563 (90497-90259) | |
| 1236-1448, gnl|mm7|chr7 (75319831-75320058) | |
| 1236-1448, gnl|Mm7|chr7 (75319831-75320043) | |
| 1236-1448, gnl|monDom2|scaffold_45 (11244332-11244089) | |
| 1236-1448, gnl|oryCun1|scaffold_191657 (5647-5414) | |
| 1236-1448, gnl|panTro1|chr16 (88532675-88532913) | |
| 1236-1448, gnl|rheMac2|chr7 (68947944-68948182) | |
| 1236-1448, gnl|rn3|chr1 (135277085-135277312) | |
| 1236-1448, gnl|tetNig1|chr13 (5010365-5010599) | |
| 1236-1448, gnl|xenTro1|scaffold_130 (942301-942520) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 67-256, gnl|bosTau2|chr21 (15898950-15898761) | |
| 67-256, gnl|Hg17|chr15 (87650239-87650428) | |
| 67-256, gnl|Mm7|chr7 (75312963-75313152) | |
| 643-1093, gnl|bosTau2|chr21 (15891910-15891467) | |
| 643-1093, gnl|Hg17|chr15 (87660630-87661080) | |
| 643-1093, gnl|Mm7|chr7 (75317929-75318346) | |
| 1236-1448, gnl|bosTau2|chr21 (15890018-15889806) | |
| 1236-1448, gnl|canFam2|chr3 (55220223-55220461) | |
| 1236-1448, gnl|danRer3|chr9 (1544030-1543809) | |
| 1236-1448, gnl|echTel1|scaffold_295326 (3252-3016) | |
| 1236-1448, gnl|fr1|chrUn (166043211-166043450) | |
| 1236-1448, gnl|galGal2|chr10 (13511308-13511055) | |
| 1236-1448, gnl|hg17|chr15 (87662766-87663004) | |
| 1236-1448, gnl|Hg17|chr15 (87662774-87662986) | |
| 1236-1448, gnl|loxAfr1|scaffold_4563 (90497-90259) | |
| 1236-1448, gnl|mm7|chr7 (75319831-75320058) | |
| 1236-1448, gnl|Mm7|chr7 (75319831-75320043) | |
| 1236-1448, gnl|monDom2|scaffold_45 (11244332-11244089) | |
| 1236-1448, gnl|oryCun1|scaffold_191657 (5647-5414) | |
| 1236-1448, gnl|panTro1|chr16 (88532675-88532913) | |
| 1236-1448, gnl|rheMac2|chr7 (68947944-68948182) | |
| 1236-1448, gnl|rn3|chr1 (135277085-135277312) | |
| 1236-1448, gnl|tetNig1|chr13 (5010365-5010599) | |
| 1236-1448, gnl|xenTro1|scaffold_130 (942301-942520) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| cli (0.305623) | |
| cov (0.264306) | |
| cmu (0.186393) | |
| gul (0.177588) | |
| eye (0.170503) | |
| cki (0.165235) | |
| csp (0.161186) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| ste (0.135208) | |
| ova (0.129132) | |
| ese (0.126502) | |
| cly (0.120642) | |
| nbm (0.0993246) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.305623) | |
| cov (0.264306) | |
| cmu (0.186393) | |
| gul (0.177588) | |
| eye (0.170503) | |
| cki (0.165235) | |
| csp (0.161186) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| ste (0.135208) | |
| ova (0.129132) | |
| ese (0.126502) | |
| cly (0.120642) | |
| nbm (0.0993246) |